Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07030 and LU632_RS07035 are separated by 49 nucleotides LU632_RS07035 and LU632_RS07040 overlap by 4 nucleotides LU632_RS07040 and LU632_RS07045 overlap by 26 nucleotides LU632_RS07045 and LU632_RS07050 are separated by 1 nucleotides
LU632_RS07030: LU632_RS07030 - hypothetical protein, at 1,337,636 to 1,338,196
_RS07030
LU632_RS07035: LU632_RS07035 - recombination protein NinB, at 1,338,246 to 1,338,683
_RS07035
LU632_RS07040: LU632_RS07040 - hypothetical protein, at 1,338,680 to 1,339,069
_RS07040
LU632_RS07045: LU632_RS07045 - hypothetical protein, at 1,339,044 to 1,339,244
_RS07045
LU632_RS07050: LU632_RS07050 - DNA cytosine methyltransferase, at 1,339,246 to 1,340,109
_RS07050
Position (kb) 1338
1339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1337.407 kb on - strand at 1337.586 kb on + strand at 1337.604 kb on + strand at 1337.604 kb on + strand at 1337.672 kb on + strand at 1337.746 kb on + strand, within LU632_RS07030 at 1337.921 kb on + strand, within LU632_RS07030 at 1337.921 kb on + strand, within LU632_RS07030 at 1337.921 kb on + strand, within LU632_RS07030 at 1337.922 kb on - strand, within LU632_RS07030 at 1337.922 kb on - strand, within LU632_RS07030 at 1338.283 kb on + strand at 1338.347 kb on - strand, within LU632_RS07035 at 1338.490 kb on + strand, within LU632_RS07035 at 1338.707 kb on + strand at 1338.708 kb on - strand at 1338.744 kb on + strand, within LU632_RS07040 at 1338.745 kb on - strand, within LU632_RS07040 at 1338.752 kb on + strand, within LU632_RS07040 at 1338.752 kb on + strand, within LU632_RS07040 at 1338.752 kb on + strand, within LU632_RS07040 at 1338.753 kb on - strand, within LU632_RS07040 at 1338.753 kb on - strand, within LU632_RS07040 at 1338.753 kb on - strand, within LU632_RS07040 at 1338.753 kb on - strand, within LU632_RS07040 at 1338.753 kb on - strand, within LU632_RS07040 at 1338.798 kb on + strand, within LU632_RS07040 at 1338.848 kb on - strand, within LU632_RS07040 at 1338.848 kb on - strand, within LU632_RS07040 at 1338.858 kb on - strand, within LU632_RS07040 at 1338.997 kb on + strand, within LU632_RS07040 at 1339.009 kb on - strand, within LU632_RS07040 at 1339.010 kb on + strand, within LU632_RS07040 at 1339.011 kb on - strand, within LU632_RS07040 at 1339.011 kb on - strand, within LU632_RS07040 at 1339.011 kb on - strand, within LU632_RS07040 at 1339.192 kb on - strand, within LU632_RS07045 at 1339.246 kb on - strand at 1339.258 kb on + strand at 1339.332 kb on - strand at 1339.360 kb on - strand, within LU632_RS07050 at 1339.384 kb on - strand, within LU632_RS07050 at 1339.423 kb on + strand, within LU632_RS07050 at 1339.424 kb on - strand, within LU632_RS07050 at 1339.424 kb on - strand, within LU632_RS07050 at 1339.538 kb on + strand, within LU632_RS07050 at 1339.556 kb on - strand, within LU632_RS07050 at 1339.556 kb on - strand, within LU632_RS07050
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2) remove 1,337,407 - -0.6 1,337,586 + -2.1 1,337,604 + -2.5 1,337,604 + +0.1 1,337,672 + +0.2 1,337,746 + LU632_RS07030 0.20 +0.5 1,337,921 + LU632_RS07030 0.51 +0.0 1,337,921 + LU632_RS07030 0.51 -0.4 1,337,921 + LU632_RS07030 0.51 +1.0 1,337,922 - LU632_RS07030 0.51 -0.0 1,337,922 - LU632_RS07030 0.51 +1.0 1,338,283 + -0.2 1,338,347 - LU632_RS07035 0.23 -0.3 1,338,490 + LU632_RS07035 0.56 -1.4 1,338,707 + -0.6 1,338,708 - -1.0 1,338,744 + LU632_RS07040 0.16 -2.7 1,338,745 - LU632_RS07040 0.17 -0.8 1,338,752 + LU632_RS07040 0.18 -1.8 1,338,752 + LU632_RS07040 0.18 +1.6 1,338,752 + LU632_RS07040 0.18 -2.4 1,338,753 - LU632_RS07040 0.19 -0.2 1,338,753 - LU632_RS07040 0.19 -0.7 1,338,753 - LU632_RS07040 0.19 -2.2 1,338,753 - LU632_RS07040 0.19 -0.7 1,338,753 - LU632_RS07040 0.19 -3.0 1,338,798 + LU632_RS07040 0.30 -0.6 1,338,848 - LU632_RS07040 0.43 +1.0 1,338,848 - LU632_RS07040 0.43 -2.0 1,338,858 - LU632_RS07040 0.46 +1.8 1,338,997 + LU632_RS07040 0.81 -0.8 1,339,009 - LU632_RS07040 0.84 +1.8 1,339,010 + LU632_RS07040 0.85 -1.0 1,339,011 - LU632_RS07040 0.85 -0.6 1,339,011 - LU632_RS07040 0.85 +1.4 1,339,011 - LU632_RS07040 0.85 +2.9 1,339,192 - LU632_RS07045 0.74 +0.2 1,339,246 - +0.5 1,339,258 + -1.7 1,339,332 - +0.6 1,339,360 - LU632_RS07050 0.13 -2.2 1,339,384 - LU632_RS07050 0.16 -0.2 1,339,423 + LU632_RS07050 0.20 -1.4 1,339,424 - LU632_RS07050 0.21 -1.4 1,339,424 - LU632_RS07050 0.21 -1.6 1,339,538 + LU632_RS07050 0.34 +2.3 1,339,556 - LU632_RS07050 0.36 +0.6 1,339,556 - LU632_RS07050 0.36 -1.6
Or see this region's nucleotide sequence