Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06675

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
1,282,027	+		LU632_RS06670	0.40	+0.1
1,282,028	-		LU632_RS06670	0.40	+0.0
1,282,028	-		LU632_RS06670	0.40	-0.6
1,282,135	+		LU632_RS06670	0.55	-0.0
1,282,267	+		LU632_RS06670	0.74	+2.0
1,282,267	+		LU632_RS06670	0.74	+2.1
1,282,268	-		LU632_RS06670	0.74	-1.4
1,282,268	-		LU632_RS06670	0.74	+1.0
1,282,268	-		LU632_RS06670	0.74	+0.5
1,282,302	+		LU632_RS06670	0.79	+2.0
1,282,319	-		LU632_RS06670	0.82	+0.5
1,282,401	+				-0.2
1,282,401	+				-2.5
1,282,438	-				-2.5
1,282,461	+				-1.0
1,282,462	-				-2.7
1,282,476	-				-1.4
1,282,556	-				+0.9
1,282,561	+				+1.0
1,282,744	+				-2.0
1,282,747	+				+2.4
1,282,747	+				-0.0
1,282,747	+				+0.5
1,282,747	+				+1.0
1,282,748	-				-2.9
1,282,748	-				-0.7
1,282,748	-				+1.9
1,282,749	+				-1.0
1,282,749	+				+1.0
1,282,749	+				+1.5
1,282,750	-				+1.4
1,282,750	-				-3.0
1,282,848	-				+4.7
1,282,866	+				-0.7
1,282,867	-				+0.1
1,282,867	-				+1.4
1,282,963	-				+1.3
1,283,044	+				+0.2
1,283,472	+	cysM	LU632_RS06675	0.54	-3.4
1,283,588	-	cysM	LU632_RS06675	0.67	-2.7
1,283,595	+	cysM	LU632_RS06675	0.68	-1.4
1,283,596	-	cysM	LU632_RS06675	0.68	-2.8
1,283,778	+	cysM	LU632_RS06675	0.89	-2.2
1,283,860	-				-2.1
1,283,860	-				-0.3
1,283,880	+				-1.9
1,284,008	+				+0.9
1,284,023	+				-0.1
1,284,056	-				+0.2
1,284,056	-				-3.3
1,284,056	-				+1.9
1,284,056	-				+0.6
1,284,171	+				+0.1
1,284,171	+				+0.9
1,284,171	+				+1.1
1,284,172	-				-2.1
1,284,172	-				+3.2
1,284,290	+				-1.8
1,284,291	+				-2.9
1,284,291	+				+0.3
1,284,363	-	cysA	LU632_RS06680	0.16	+1.4
1,284,451	+	cysA	LU632_RS06680	0.24	-2.4
1,284,488	+	cysA	LU632_RS06680	0.28	-0.5
1,284,634	-	cysA	LU632_RS06680	0.41	+3.2
1,284,717	+	cysA	LU632_RS06680	0.49	-0.1
1,284,717	+	cysA	LU632_RS06680	0.49	-0.3
1,284,718	-	cysA	LU632_RS06680	0.49	-1.4