Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06155

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
1,171,968	-				+2.8
1,171,968	-				+3.2
1,172,012	-				+1.0
1,172,024	-				-0.6
1,172,024	-				+0.4
1,172,053	-		LU632_RS06150	0.11	-0.4
1,172,054	+		LU632_RS06150	0.11	+3.5
1,172,055	-		LU632_RS06150	0.11	-1.2
1,172,470	-		LU632_RS06150	0.61	+0.8
1,172,489	+		LU632_RS06150	0.63	+2.8
1,172,489	+		LU632_RS06150	0.63	+6.7
1,172,490	-		LU632_RS06150	0.63	+2.3
1,172,490	-		LU632_RS06150	0.63	+2.4
1,172,490	-		LU632_RS06150	0.63	+3.8
1,172,490	-		LU632_RS06150	0.63	+0.5
1,172,681	+		LU632_RS06150	0.86	+4.1
1,172,682	-		LU632_RS06150	0.86	+5.0
1,172,724	+				+0.2
1,172,724	+				+0.6
1,172,804	-				-0.0
1,172,843	+				+1.8
1,172,843	+				+1.0
1,172,844	-				+0.9
1,172,867	-				-0.4
1,172,989	+				+1.7
1,172,990	-				-1.0
1,172,990	-				-2.6
1,172,992	-				-3.1
1,172,993	+				-1.3
1,172,993	+				+3.2
1,172,994	-				-2.6
1,173,055	-		LU632_RS06155	0.13	+0.0
1,173,163	-		LU632_RS06155	0.27	-1.2
1,173,165	+		LU632_RS06155	0.27	+1.0
1,173,258	+		LU632_RS06155	0.39	+3.3
1,173,259	-		LU632_RS06155	0.39	-1.8
1,173,269	-		LU632_RS06155	0.41	-0.2
1,173,309	+		LU632_RS06155	0.46	+3.3
1,173,310	-		LU632_RS06155	0.46	-1.1
1,173,367	-		LU632_RS06155	0.54	+4.3
1,173,403	-		LU632_RS06155	0.58	-2.5
1,173,441	+		LU632_RS06155	0.63	+2.7
1,173,454	-		LU632_RS06155	0.65	+2.0
1,173,677	-				+0.3
1,173,711	-				+3.2
1,173,752	-				+1.0
1,173,781	-				-1.8
1,173,781	-				+1.5
1,173,794	-				-1.2
1,173,916	-				+0.1
1,173,921	-				+0.3
1,174,160	+				+1.6
1,174,419	+				+1.2
1,174,431	+		LU632_RS06160	0.10	+2.5
1,174,431	+		LU632_RS06160	0.10	+1.1
1,174,656	+		LU632_RS06160	0.60	-2.6
1,174,657	-		LU632_RS06160	0.60	+1.0
1,174,660	+		LU632_RS06160	0.61	+0.3
1,174,661	-		LU632_RS06160	0.61	+1.0
1,174,661	-		LU632_RS06160	0.61	-0.7
1,174,716	-		LU632_RS06160	0.74	+0.3
1,174,716	-		LU632_RS06160	0.74	+1.1