Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04615 and LU632_RS04620 are separated by 164 nucleotides LU632_RS04620 and LU632_RS04625 are separated by 97 nucleotides
LU632_RS04615: LU632_RS04615 - IS3 family transposase, at 902,004 to 903,124
_RS04615
LU632_RS04620: LU632_RS04620 - type III chaperone protein ShcF, at 903,289 to 903,699
_RS04620
LU632_RS04625: LU632_RS04625 - hypothetical protein, at 903,797 to 904,717
_RS04625
Position (kb) 903
904 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 903.131 kb on + strand at 903.131 kb on + strand at 903.135 kb on + strand at 903.135 kb on + strand at 903.206 kb on + strand at 903.206 kb on + strand at 903.246 kb on - strand at 903.286 kb on - strand at 903.310 kb on - strand at 903.314 kb on + strand at 903.315 kb on - strand at 903.315 kb on - strand at 903.382 kb on + strand, within LU632_RS04620 at 903.383 kb on - strand, within LU632_RS04620 at 903.383 kb on - strand, within LU632_RS04620 at 903.384 kb on + strand, within LU632_RS04620 at 903.384 kb on + strand, within LU632_RS04620 at 903.385 kb on - strand, within LU632_RS04620 at 903.385 kb on - strand, within LU632_RS04620 at 903.439 kb on + strand, within LU632_RS04620 at 903.441 kb on + strand, within LU632_RS04620 at 903.442 kb on - strand, within LU632_RS04620 at 903.444 kb on + strand, within LU632_RS04620 at 903.448 kb on - strand, within LU632_RS04620 at 903.565 kb on - strand, within LU632_RS04620 at 903.579 kb on + strand, within LU632_RS04620 at 903.582 kb on + strand, within LU632_RS04620 at 903.709 kb on + strand at 903.710 kb on - strand at 903.761 kb on + strand at 903.762 kb on - strand at 903.762 kb on - strand at 903.762 kb on - strand at 903.766 kb on - strand at 903.766 kb on - strand at 903.776 kb on + strand at 903.846 kb on - strand at 903.846 kb on - strand at 903.866 kb on + strand at 903.964 kb on + strand, within LU632_RS04625 at 903.964 kb on + strand, within LU632_RS04625 at 904.148 kb on + strand, within LU632_RS04625 at 904.160 kb on - strand, within LU632_RS04625 at 904.160 kb on - strand, within LU632_RS04625 at 904.160 kb on - strand, within LU632_RS04625 at 904.255 kb on + strand, within LU632_RS04625 at 904.302 kb on - strand, within LU632_RS04625 at 904.397 kb on - strand, within LU632_RS04625 at 904.402 kb on + strand, within LU632_RS04625 at 904.402 kb on + strand, within LU632_RS04625 at 904.402 kb on + strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.431 kb on - strand, within LU632_RS04625 at 904.498 kb on + strand, within LU632_RS04625 at 904.511 kb on - strand, within LU632_RS04625 at 904.646 kb on + strand at 904.647 kb on - strand at 904.664 kb on + strand at 904.665 kb on - strand at 904.696 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2) remove 903,131 + -2.0 903,131 + -1.1 903,135 + -1.3 903,135 + -2.6 903,206 + -2.6 903,206 + -1.3 903,246 - +1.5 903,286 - -0.6 903,310 - +0.7 903,314 + -0.3 903,315 - +0.6 903,315 - +0.6 903,382 + LU632_RS04620 0.23 -0.9 903,383 - LU632_RS04620 0.23 +0.0 903,383 - LU632_RS04620 0.23 +1.2 903,384 + LU632_RS04620 0.23 +1.4 903,384 + LU632_RS04620 0.23 +1.9 903,385 - LU632_RS04620 0.23 -1.0 903,385 - LU632_RS04620 0.23 +1.7 903,439 + LU632_RS04620 0.36 -1.4 903,441 + LU632_RS04620 0.37 -2.7 903,442 - LU632_RS04620 0.37 +3.1 903,444 + LU632_RS04620 0.38 -2.3 903,448 - LU632_RS04620 0.39 -0.3 903,565 - LU632_RS04620 0.67 +0.0 903,579 + LU632_RS04620 0.71 +1.9 903,582 + LU632_RS04620 0.71 +1.1 903,709 + +1.5 903,710 - -0.8 903,761 + +2.4 903,762 - +1.0 903,762 - +1.4 903,762 - -2.9 903,766 - -3.2 903,766 - +0.7 903,776 + +0.4 903,846 - -1.8 903,846 - +0.7 903,866 + -0.2 903,964 + LU632_RS04625 0.18 -0.9 903,964 + LU632_RS04625 0.18 -1.1 904,148 + LU632_RS04625 0.38 -2.0 904,160 - LU632_RS04625 0.39 -0.3 904,160 - LU632_RS04625 0.39 -1.0 904,160 - LU632_RS04625 0.39 -1.3 904,255 + LU632_RS04625 0.50 +1.5 904,302 - LU632_RS04625 0.55 +1.6 904,397 - LU632_RS04625 0.65 -2.8 904,402 + LU632_RS04625 0.66 +2.4 904,402 + LU632_RS04625 0.66 -1.6 904,402 + LU632_RS04625 0.66 +0.6 904,403 - LU632_RS04625 0.66 +2.3 904,403 - LU632_RS04625 0.66 +5.1 904,403 - LU632_RS04625 0.66 +1.7 904,403 - LU632_RS04625 0.66 -0.4 904,403 - LU632_RS04625 0.66 +1.5 904,403 - LU632_RS04625 0.66 +0.4 904,403 - LU632_RS04625 0.66 +0.5 904,403 - LU632_RS04625 0.66 -1.0 904,431 - LU632_RS04625 0.69 -0.6 904,498 + LU632_RS04625 0.76 +0.3 904,511 - LU632_RS04625 0.78 +1.0 904,646 + -1.3 904,647 - +1.0 904,664 + +0.7 904,665 - -0.6 904,696 + -1.6
Or see this region's nucleotide sequence