Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt vgrG and LU632_RS03905 overlap by 4 nucleotides LU632_RS03905 and LU632_RS03910 are separated by 3 nucleotides
LU632_RS03900: vgrG - type VI secretion system tip protein VgrG, at 781,439 to 783,370
vgrG
LU632_RS03905: LU632_RS03905 - DUF1795 domain-containing protein, at 783,367 to 783,798
_RS03905
LU632_RS03910: LU632_RS03910 - DUF6531 domain-containing protein, at 783,802 to 787,896
_RS03910
Position (kb) 781
782
783
784 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 780.502 kb on - strand at 780.507 kb on - strand at 780.890 kb on - strand at 780.923 kb on + strand at 780.967 kb on + strand at 780.967 kb on + strand at 780.968 kb on - strand at 781.050 kb on - strand at 781.050 kb on - strand at 781.239 kb on + strand at 781.251 kb on - strand at 781.305 kb on + strand at 781.305 kb on + strand at 781.306 kb on - strand at 781.306 kb on - strand at 781.435 kb on + strand at 781.439 kb on - strand at 781.439 kb on - strand at 781.439 kb on - strand at 781.710 kb on - strand, within vgrG at 781.762 kb on - strand, within vgrG at 781.795 kb on - strand, within vgrG at 781.831 kb on - strand, within vgrG at 781.935 kb on - strand, within vgrG at 781.937 kb on + strand, within vgrG at 781.937 kb on + strand, within vgrG at 782.211 kb on - strand, within vgrG at 782.347 kb on + strand, within vgrG at 782.347 kb on + strand, within vgrG at 782.348 kb on - strand, within vgrG at 782.387 kb on + strand, within vgrG at 782.388 kb on - strand, within vgrG at 782.408 kb on + strand, within vgrG at 782.409 kb on - strand, within vgrG at 782.409 kb on - strand, within vgrG at 782.429 kb on + strand, within vgrG at 782.429 kb on + strand, within vgrG at 782.474 kb on - strand, within vgrG at 782.498 kb on + strand, within vgrG at 782.498 kb on + strand, within vgrG at 782.594 kb on + strand, within vgrG at 782.595 kb on - strand, within vgrG at 782.740 kb on - strand, within vgrG at 782.747 kb on - strand, within vgrG at 782.789 kb on + strand, within vgrG at 782.789 kb on + strand, within vgrG at 782.790 kb on - strand, within vgrG at 782.954 kb on - strand, within vgrG at 783.093 kb on - strand, within vgrG at 783.271 kb on + strand at 783.347 kb on - strand at 783.520 kb on + strand, within LU632_RS03905 at 783.521 kb on - strand, within LU632_RS03905 at 783.895 kb on + strand at 783.908 kb on + strand at 783.966 kb on - strand at 784.105 kb on - strand at 784.105 kb on - strand at 784.324 kb on + strand, within LU632_RS03910 at 784.337 kb on + strand, within LU632_RS03910 at 784.338 kb on - strand, within LU632_RS03910
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2) remove 780,502 - -2.7 780,507 - +2.0 780,890 - +0.8 780,923 + +4.0 780,967 + -1.3 780,967 + +2.2 780,968 - +0.5 781,050 - -1.2 781,050 - -2.0 781,239 + -3.6 781,251 - +1.0 781,305 + +1.9 781,305 + -0.8 781,306 - -2.2 781,306 - +3.7 781,435 + +1.0 781,439 - -1.2 781,439 - -1.9 781,439 - -0.5 781,710 - vgrG LU632_RS03900 0.14 -2.3 781,762 - vgrG LU632_RS03900 0.17 +0.9 781,795 - vgrG LU632_RS03900 0.18 -2.9 781,831 - vgrG LU632_RS03900 0.20 +0.5 781,935 - vgrG LU632_RS03900 0.26 -3.2 781,937 + vgrG LU632_RS03900 0.26 -1.3 781,937 + vgrG LU632_RS03900 0.26 +3.0 782,211 - vgrG LU632_RS03900 0.40 -1.6 782,347 + vgrG LU632_RS03900 0.47 -2.9 782,347 + vgrG LU632_RS03900 0.47 +1.1 782,348 - vgrG LU632_RS03900 0.47 -1.3 782,387 + vgrG LU632_RS03900 0.49 +0.2 782,388 - vgrG LU632_RS03900 0.49 -0.6 782,408 + vgrG LU632_RS03900 0.50 -2.8 782,409 - vgrG LU632_RS03900 0.50 -0.4 782,409 - vgrG LU632_RS03900 0.50 -0.1 782,429 + vgrG LU632_RS03900 0.51 +2.8 782,429 + vgrG LU632_RS03900 0.51 -2.6 782,474 - vgrG LU632_RS03900 0.54 +1.2 782,498 + vgrG LU632_RS03900 0.55 +0.3 782,498 + vgrG LU632_RS03900 0.55 -0.1 782,594 + vgrG LU632_RS03900 0.60 +1.5 782,595 - vgrG LU632_RS03900 0.60 +0.2 782,740 - vgrG LU632_RS03900 0.67 -2.3 782,747 - vgrG LU632_RS03900 0.68 -0.6 782,789 + vgrG LU632_RS03900 0.70 -2.3 782,789 + vgrG LU632_RS03900 0.70 +0.4 782,790 - vgrG LU632_RS03900 0.70 +1.2 782,954 - vgrG LU632_RS03900 0.78 -0.2 783,093 - vgrG LU632_RS03900 0.86 +1.5 783,271 + -0.9 783,347 - +2.2 783,520 + LU632_RS03905 0.35 +0.5 783,521 - LU632_RS03905 0.36 -1.0 783,895 + +0.3 783,908 + +3.0 783,966 - +0.0 784,105 - -0.9 784,105 - +1.1 784,324 + LU632_RS03910 0.13 +1.2 784,337 + LU632_RS03910 0.13 -2.8 784,338 - LU632_RS03910 0.13 +0.6
Or see this region's nucleotide sequence