Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt radA and nadR are separated by 105 nucleotides nadR and LU632_RS02560 are separated by 23 nucleotides LU632_RS02560 and ettA are separated by 317 nucleotides
LU632_RS02550: radA - DNA repair protein RadA, at 506,272 to 507,654
radA
LU632_RS02555: nadR - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 507,760 to 508,986
nadR
LU632_RS02560: LU632_RS02560 - zinc-binding dehydrogenase, at 509,010 to 509,411
_RS02560
LU632_RS02565: ettA - energy-dependent translational throttle protein EttA, at 509,729 to 511,396
ettA
Position (kb) 507
508
509 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 506.784 kb on + strand, within radA at 506.878 kb on + strand, within radA at 506.879 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.979 kb on + strand, within radA at 506.979 kb on + strand, within radA at 506.979 kb on + strand, within radA at 507.037 kb on - strand, within radA at 507.037 kb on - strand, within radA at 507.043 kb on - strand, within radA at 507.604 kb on + strand at 507.667 kb on + strand at 507.720 kb on + strand at 507.720 kb on + strand at 507.721 kb on - strand at 507.735 kb on - strand at 507.776 kb on - strand at 507.851 kb on - strand at 507.879 kb on + strand at 508.000 kb on + strand, within nadR at 508.000 kb on - strand, within nadR at 508.003 kb on + strand, within nadR at 508.023 kb on + strand, within nadR at 508.023 kb on + strand, within nadR at 508.044 kb on + strand, within nadR at 508.152 kb on + strand, within nadR at 508.174 kb on - strand, within nadR at 508.286 kb on - strand, within nadR at 508.287 kb on + strand, within nadR at 508.384 kb on - strand, within nadR at 508.420 kb on + strand, within nadR at 508.506 kb on - strand, within nadR at 508.507 kb on - strand, within nadR at 508.524 kb on + strand, within nadR at 508.525 kb on - strand, within nadR at 508.527 kb on + strand, within nadR at 508.547 kb on + strand, within nadR at 508.559 kb on - strand, within nadR at 508.601 kb on - strand, within nadR at 508.681 kb on - strand, within nadR at 508.681 kb on - strand, within nadR at 508.800 kb on + strand, within nadR at 508.800 kb on + strand, within nadR at 508.800 kb on + strand, within nadR at 508.843 kb on - strand, within nadR at 508.854 kb on + strand, within nadR at 508.897 kb on - strand at 508.930 kb on + strand at 508.930 kb on + strand at 508.930 kb on - strand at 508.931 kb on - strand at 509.196 kb on + strand, within LU632_RS02560 at 509.197 kb on - strand, within LU632_RS02560 at 509.248 kb on - strand, within LU632_RS02560 at 509.314 kb on - strand, within LU632_RS02560 at 509.363 kb on + strand, within LU632_RS02560 at 509.365 kb on + strand, within LU632_RS02560 at 509.443 kb on + strand at 509.443 kb on + strand at 509.443 kb on + strand at 509.444 kb on - strand at 509.485 kb on + strand at 509.533 kb on + strand at 509.537 kb on + strand at 509.537 kb on + strand at 509.537 kb on + strand at 509.637 kb on + strand at 509.638 kb on - strand at 509.660 kb on + strand at 509.660 kb on + strand at 509.661 kb on - strand at 509.676 kb on - strand at 509.731 kb on - strand at 509.731 kb on - strand at 509.753 kb on - strand at 509.753 kb on - strand at 509.755 kb on + strand at 509.756 kb on - strand at 509.798 kb on - strand at 509.867 kb on - strand at 509.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2) remove 506,784 + radA LU632_RS02550 0.37 -0.9 506,878 + radA LU632_RS02550 0.44 +3.3 506,879 - radA LU632_RS02550 0.44 +0.1 506,934 - radA LU632_RS02550 0.48 -0.8 506,934 - radA LU632_RS02550 0.48 +0.1 506,934 - radA LU632_RS02550 0.48 +0.7 506,979 + radA LU632_RS02550 0.51 -0.5 506,979 + radA LU632_RS02550 0.51 +0.2 506,979 + radA LU632_RS02550 0.51 +0.1 507,037 - radA LU632_RS02550 0.55 -1.7 507,037 - radA LU632_RS02550 0.55 -1.5 507,043 - radA LU632_RS02550 0.56 -4.1 507,604 + +0.1 507,667 + -3.5 507,720 + +1.3 507,720 + -3.4 507,721 - -2.8 507,735 - -4.1 507,776 - -0.9 507,851 - -0.7 507,879 + -1.7 508,000 + nadR LU632_RS02555 0.20 -1.4 508,000 - nadR LU632_RS02555 0.20 -2.2 508,003 + nadR LU632_RS02555 0.20 -0.2 508,023 + nadR LU632_RS02555 0.21 -1.9 508,023 + nadR LU632_RS02555 0.21 -2.2 508,044 + nadR LU632_RS02555 0.23 -3.6 508,152 + nadR LU632_RS02555 0.32 -3.4 508,174 - nadR LU632_RS02555 0.34 -3.6 508,286 - nadR LU632_RS02555 0.43 -1.5 508,287 + nadR LU632_RS02555 0.43 -2.1 508,384 - nadR LU632_RS02555 0.51 -1.9 508,420 + nadR LU632_RS02555 0.54 -1.8 508,506 - nadR LU632_RS02555 0.61 -4.1 508,507 - nadR LU632_RS02555 0.61 -3.2 508,524 + nadR LU632_RS02555 0.62 -4.2 508,525 - nadR LU632_RS02555 0.62 -4.2 508,527 + nadR LU632_RS02555 0.63 +1.1 508,547 + nadR LU632_RS02555 0.64 -1.5 508,559 - nadR LU632_RS02555 0.65 -1.6 508,601 - nadR LU632_RS02555 0.69 -2.3 508,681 - nadR LU632_RS02555 0.75 -2.0 508,681 - nadR LU632_RS02555 0.75 +1.8 508,800 + nadR LU632_RS02555 0.85 -2.6 508,800 + nadR LU632_RS02555 0.85 -3.2 508,800 + nadR LU632_RS02555 0.85 -1.5 508,843 - nadR LU632_RS02555 0.88 -0.9 508,854 + nadR LU632_RS02555 0.89 -0.8 508,897 - -3.0 508,930 + -1.9 508,930 + -3.1 508,930 - -1.6 508,931 - -0.5 509,196 + LU632_RS02560 0.46 +1.4 509,197 - LU632_RS02560 0.47 -1.7 509,248 - LU632_RS02560 0.59 +0.6 509,314 - LU632_RS02560 0.76 -1.7 509,363 + LU632_RS02560 0.88 -1.2 509,365 + LU632_RS02560 0.88 -0.6 509,443 + -1.5 509,443 + -0.0 509,443 + -1.9 509,444 - -2.1 509,485 + -2.7 509,533 + +0.5 509,537 + +0.9 509,537 + -1.2 509,537 + -1.3 509,637 + +0.6 509,638 - -0.4 509,660 + -0.5 509,660 + -3.0 509,661 - -0.3 509,676 - -0.3 509,731 - +1.8 509,731 - +0.2 509,753 - +1.1 509,753 - +0.1 509,755 + +1.8 509,756 - -2.5 509,798 - +0.9 509,867 - +0.7 509,879 - +1.2
Or see this region's nucleotide sequence