Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02465 and LU632_RS02470 are separated by 141 nucleotides LU632_RS02470 and prfC are separated by 222 nucleotides prfC and tnpA are separated by 171 nucleotides tnpA and osmY are separated by 306 nucleotides
LU632_RS02465: LU632_RS02465 - IS256 family transposase, at 489,777 to 490,985
_RS02465
LU632_RS02470: LU632_RS02470 - DinI family protein, at 491,127 to 491,377
_RS02470
LU632_RS02475: prfC - peptide chain release factor 3, at 491,600 to 493,189
prfC
LU632_RS02480: tnpA - IS200/IS605 family transposase, at 493,361 to 493,798
tnpA
LU632_RS02485: osmY - molecular chaperone OsmY, at 494,105 to 494,719
osmY
Position (kb) 491
492
493
494 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 491.035 kb on + strand at 491.105 kb on - strand at 491.105 kb on - strand at 491.133 kb on - strand at 491.134 kb on + strand at 491.151 kb on - strand at 491.185 kb on + strand, within LU632_RS02470 at 491.185 kb on + strand, within LU632_RS02470 at 491.185 kb on + strand, within LU632_RS02470 at 491.263 kb on + strand, within LU632_RS02470 at 491.263 kb on + strand, within LU632_RS02470 at 491.264 kb on - strand, within LU632_RS02470 at 491.264 kb on - strand, within LU632_RS02470 at 491.264 kb on - strand, within LU632_RS02470 at 491.264 kb on - strand, within LU632_RS02470 at 491.335 kb on + strand, within LU632_RS02470 at 491.377 kb on + strand at 491.378 kb on - strand at 491.481 kb on - strand at 491.485 kb on + strand at 491.539 kb on + strand at 491.539 kb on + strand at 491.539 kb on + strand at 491.539 kb on - strand at 491.540 kb on - strand at 491.540 kb on - strand at 491.540 kb on - strand at 491.573 kb on + strand at 491.583 kb on + strand at 491.583 kb on + strand at 491.584 kb on - strand at 491.594 kb on + strand at 491.595 kb on - strand at 491.716 kb on + strand at 491.893 kb on + strand, within prfC at 491.893 kb on + strand, within prfC at 491.894 kb on - strand, within prfC at 491.894 kb on - strand, within prfC at 492.107 kb on - strand, within prfC at 492.127 kb on + strand, within prfC at 492.146 kb on + strand, within prfC at 492.155 kb on + strand, within prfC at 492.156 kb on - strand, within prfC at 492.170 kb on + strand, within prfC at 492.171 kb on - strand, within prfC at 492.177 kb on - strand, within prfC at 492.310 kb on - strand, within prfC at 492.401 kb on - strand, within prfC at 492.401 kb on - strand, within prfC at 492.401 kb on - strand, within prfC at 492.401 kb on - strand, within prfC at 492.622 kb on - strand, within prfC at 492.624 kb on + strand, within prfC at 492.624 kb on + strand, within prfC at 492.625 kb on - strand, within prfC at 492.625 kb on - strand, within prfC at 492.625 kb on - strand, within prfC at 492.625 kb on - strand, within prfC at 492.625 kb on - strand, within prfC at 492.713 kb on - strand, within prfC at 492.713 kb on - strand, within prfC at 492.891 kb on + strand, within prfC at 492.895 kb on + strand, within prfC at 492.895 kb on + strand, within prfC at 492.895 kb on + strand, within prfC at 492.896 kb on - strand, within prfC at 492.896 kb on - strand, within prfC at 492.896 kb on - strand, within prfC at 492.896 kb on - strand, within prfC at 492.896 kb on - strand, within prfC at 492.987 kb on - strand, within prfC at 492.987 kb on - strand, within prfC at 492.998 kb on - strand, within prfC at 493.073 kb on - strand at 493.073 kb on - strand at 493.107 kb on - strand at 493.107 kb on - strand at 493.107 kb on - strand at 493.195 kb on + strand at 493.206 kb on + strand at 493.206 kb on + strand at 493.207 kb on - strand at 493.207 kb on - strand at 493.207 kb on - strand at 493.939 kb on + strand at 493.939 kb on + strand at 493.941 kb on + strand at 493.942 kb on - strand at 493.949 kb on - strand at 493.979 kb on + strand at 493.991 kb on + strand at 494.005 kb on + strand at 494.117 kb on - strand at 494.134 kb on + strand at 494.135 kb on - strand at 494.142 kb on + strand at 494.143 kb on - strand at 494.171 kb on + strand, within osmY at 494.188 kb on + strand, within osmY
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2) remove 491,035 + +1.1 491,105 - +2.3 491,105 - +0.6 491,133 - +0.5 491,134 + +1.1 491,151 - +0.5 491,185 + LU632_RS02470 0.23 +2.1 491,185 + LU632_RS02470 0.23 -3.2 491,185 + LU632_RS02470 0.23 +0.9 491,263 + LU632_RS02470 0.54 -0.9 491,263 + LU632_RS02470 0.54 -0.1 491,264 - LU632_RS02470 0.55 -2.5 491,264 - LU632_RS02470 0.55 -3.2 491,264 - LU632_RS02470 0.55 +0.1 491,264 - LU632_RS02470 0.55 -2.5 491,335 + LU632_RS02470 0.83 +3.3 491,377 + +0.1 491,378 - +0.8 491,481 - +0.9 491,485 + +0.5 491,539 + +1.6 491,539 + +0.7 491,539 + +0.8 491,539 - -1.7 491,540 - -2.8 491,540 - +2.1 491,540 - -0.5 491,573 + -2.5 491,583 + -0.5 491,583 + -1.9 491,584 - -0.7 491,594 + -0.7 491,595 - -0.5 491,716 + +1.1 491,893 + prfC LU632_RS02475 0.18 -0.6 491,893 + prfC LU632_RS02475 0.18 -0.5 491,894 - prfC LU632_RS02475 0.18 +0.7 491,894 - prfC LU632_RS02475 0.18 +0.1 492,107 - prfC LU632_RS02475 0.32 -2.0 492,127 + prfC LU632_RS02475 0.33 -0.5 492,146 + prfC LU632_RS02475 0.34 -2.5 492,155 + prfC LU632_RS02475 0.35 -2.2 492,156 - prfC LU632_RS02475 0.35 +0.1 492,170 + prfC LU632_RS02475 0.36 -3.2 492,171 - prfC LU632_RS02475 0.36 -2.5 492,177 - prfC LU632_RS02475 0.36 -2.6 492,310 - prfC LU632_RS02475 0.45 -2.1 492,401 - prfC LU632_RS02475 0.50 -3.0 492,401 - prfC LU632_RS02475 0.50 -0.2 492,401 - prfC LU632_RS02475 0.50 -1.6 492,401 - prfC LU632_RS02475 0.50 -2.6 492,622 - prfC LU632_RS02475 0.64 +0.0 492,624 + prfC LU632_RS02475 0.64 -3.1 492,624 + prfC LU632_RS02475 0.64 -1.1 492,625 - prfC LU632_RS02475 0.64 -3.0 492,625 - prfC LU632_RS02475 0.64 -0.5 492,625 - prfC LU632_RS02475 0.64 -1.7 492,625 - prfC LU632_RS02475 0.64 +1.1 492,625 - prfC LU632_RS02475 0.64 -3.3 492,713 - prfC LU632_RS02475 0.70 -1.9 492,713 - prfC LU632_RS02475 0.70 -0.9 492,891 + prfC LU632_RS02475 0.81 -0.6 492,895 + prfC LU632_RS02475 0.81 -4.3 492,895 + prfC LU632_RS02475 0.81 +0.1 492,895 + prfC LU632_RS02475 0.81 -1.2 492,896 - prfC LU632_RS02475 0.82 +0.1 492,896 - prfC LU632_RS02475 0.82 -1.8 492,896 - prfC LU632_RS02475 0.82 -1.2 492,896 - prfC LU632_RS02475 0.82 -1.2 492,896 - prfC LU632_RS02475 0.82 -1.6 492,987 - prfC LU632_RS02475 0.87 -1.2 492,987 - prfC LU632_RS02475 0.87 -1.7 492,998 - prfC LU632_RS02475 0.88 -1.7 493,073 - -3.4 493,073 - -1.7 493,107 - -2.7 493,107 - -3.0 493,107 - -2.5 493,195 + -1.6 493,206 + -1.0 493,206 + +0.3 493,207 - +0.1 493,207 - +1.1 493,207 - +3.9 493,939 + +1.0 493,939 + -2.2 493,941 + -0.9 493,942 - +0.7 493,949 - -1.0 493,979 + -0.3 493,991 + +3.4 494,005 + +2.7 494,117 - -0.5 494,134 + -1.1 494,135 - +0.1 494,142 + -0.3 494,143 - +3.2 494,171 + osmY LU632_RS02485 0.11 -4.2 494,188 + osmY LU632_RS02485 0.13 +1.0
Or see this region's nucleotide sequence