Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02435 and LU632_RS02440 overlap by 8 nucleotides LU632_RS02440 and LU632_RS02445 overlap by 8 nucleotides LU632_RS02445 and LU632_RS02450 are separated by 56 nucleotides
LU632_RS02435: LU632_RS02435 - ABC transporter substrate-binding protein, at 485,766 to 486,785
_RS02435
LU632_RS02440: LU632_RS02440 - ABC transporter ATP-binding protein, at 486,778 to 487,590
_RS02440
LU632_RS02445: LU632_RS02445 - ABC transporter permease, at 487,583 to 488,419
_RS02445
LU632_RS02450: LU632_RS02450 - hypothetical protein, at 488,476 to 488,580
_RS02450
Position (kb) 486
487
488 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 485.803 kb on + strand at 485.888 kb on - strand, within LU632_RS02435 at 485.888 kb on - strand, within LU632_RS02435 at 485.890 kb on - strand, within LU632_RS02435 at 485.890 kb on - strand, within LU632_RS02435 at 485.930 kb on + strand, within LU632_RS02435 at 486.038 kb on + strand, within LU632_RS02435 at 486.039 kb on - strand, within LU632_RS02435 at 486.039 kb on - strand, within LU632_RS02435 at 486.039 kb on - strand, within LU632_RS02435 at 486.045 kb on - strand, within LU632_RS02435 at 486.049 kb on + strand, within LU632_RS02435 at 486.066 kb on + strand, within LU632_RS02435 at 486.068 kb on + strand, within LU632_RS02435 at 486.068 kb on + strand, within LU632_RS02435 at 486.068 kb on + strand, within LU632_RS02435 at 486.068 kb on + strand, within LU632_RS02435 at 486.167 kb on + strand, within LU632_RS02435 at 486.218 kb on + strand, within LU632_RS02435 at 486.219 kb on - strand, within LU632_RS02435 at 486.219 kb on - strand, within LU632_RS02435 at 486.223 kb on + strand, within LU632_RS02435 at 486.224 kb on - strand, within LU632_RS02435 at 486.314 kb on + strand, within LU632_RS02435 at 486.314 kb on + strand, within LU632_RS02435 at 486.315 kb on - strand, within LU632_RS02435 at 486.315 kb on - strand, within LU632_RS02435 at 486.315 kb on - strand, within LU632_RS02435 at 486.366 kb on - strand, within LU632_RS02435 at 486.374 kb on + strand, within LU632_RS02435 at 486.377 kb on + strand, within LU632_RS02435 at 486.377 kb on + strand, within LU632_RS02435 at 486.377 kb on + strand, within LU632_RS02435 at 486.499 kb on + strand, within LU632_RS02435 at 486.523 kb on + strand, within LU632_RS02435 at 486.618 kb on - strand, within LU632_RS02435 at 486.618 kb on - strand, within LU632_RS02435 at 486.625 kb on + strand, within LU632_RS02435 at 486.625 kb on + strand, within LU632_RS02435 at 486.625 kb on + strand, within LU632_RS02435 at 486.625 kb on + strand, within LU632_RS02435 at 486.625 kb on + strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.626 kb on - strand, within LU632_RS02435 at 486.635 kb on + strand, within LU632_RS02435 at 486.635 kb on + strand, within LU632_RS02435 at 486.635 kb on + strand, within LU632_RS02435 at 486.635 kb on + strand, within LU632_RS02435 at 486.636 kb on - strand, within LU632_RS02435 at 486.656 kb on + strand, within LU632_RS02435 at 486.791 kb on + strand at 486.792 kb on - strand at 486.814 kb on + strand at 486.814 kb on + strand at 486.815 kb on - strand at 486.854 kb on + strand at 486.854 kb on + strand at 486.925 kb on - strand, within LU632_RS02440 at 487.012 kb on - strand, within LU632_RS02440 at 487.012 kb on - strand, within LU632_RS02440 at 487.012 kb on - strand, within LU632_RS02440 at 487.027 kb on + strand, within LU632_RS02440 at 487.030 kb on - strand, within LU632_RS02440 at 487.030 kb on - strand, within LU632_RS02440 at 487.047 kb on - strand, within LU632_RS02440 at 487.160 kb on + strand, within LU632_RS02440 at 487.177 kb on + strand, within LU632_RS02440 at 487.178 kb on - strand, within LU632_RS02440 at 487.325 kb on + strand, within LU632_RS02440 at 487.352 kb on + strand, within LU632_RS02440 at 487.353 kb on - strand, within LU632_RS02440 at 487.353 kb on - strand, within LU632_RS02440 at 487.353 kb on - strand, within LU632_RS02440 at 487.439 kb on + strand, within LU632_RS02440 at 487.439 kb on + strand, within LU632_RS02440 at 487.479 kb on - strand, within LU632_RS02440 at 487.514 kb on + strand at 487.515 kb on - strand at 487.515 kb on - strand at 487.518 kb on + strand at 487.518 kb on + strand at 487.518 kb on + strand at 487.518 kb on + strand at 487.518 kb on + strand at 487.519 kb on - strand at 487.519 kb on - strand at 487.536 kb on - strand at 487.551 kb on - strand at 487.569 kb on + strand at 487.569 kb on + strand at 487.569 kb on + strand at 487.624 kb on - strand at 487.946 kb on + strand, within LU632_RS02445 at 487.947 kb on - strand, within LU632_RS02445 at 487.999 kb on + strand, within LU632_RS02445 at 488.000 kb on - strand, within LU632_RS02445 at 488.000 kb on - strand, within LU632_RS02445 at 488.077 kb on - strand, within LU632_RS02445 at 488.077 kb on - strand, within LU632_RS02445 at 488.099 kb on - strand, within LU632_RS02445 at 488.166 kb on - strand, within LU632_RS02445 at 488.166 kb on - strand, within LU632_RS02445 at 488.206 kb on + strand, within LU632_RS02445 at 488.206 kb on + strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.207 kb on - strand, within LU632_RS02445 at 488.249 kb on + strand, within LU632_RS02445 at 488.250 kb on - strand, within LU632_RS02445 at 488.277 kb on - strand, within LU632_RS02445 at 488.277 kb on - strand, within LU632_RS02445 at 488.280 kb on + strand, within LU632_RS02445 at 488.280 kb on + strand, within LU632_RS02445 at 488.315 kb on - strand, within LU632_RS02445 at 488.315 kb on - strand, within LU632_RS02445 at 488.337 kb on + strand at 488.337 kb on + strand at 488.338 kb on - strand at 488.359 kb on - strand at 488.361 kb on + strand at 488.378 kb on - strand at 488.398 kb on + strand at 488.398 kb on + strand at 488.398 kb on + strand at 488.477 kb on + strand at 488.528 kb on + strand, within LU632_RS02450 at 488.550 kb on + strand, within LU632_RS02450
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2) remove 485,803 + -0.2 485,888 - LU632_RS02435 0.12 +1.2 485,888 - LU632_RS02435 0.12 -2.6 485,890 - LU632_RS02435 0.12 +1.3 485,890 - LU632_RS02435 0.12 +0.1 485,930 + LU632_RS02435 0.16 -2.6 486,038 + LU632_RS02435 0.27 -1.6 486,039 - LU632_RS02435 0.27 -1.7 486,039 - LU632_RS02435 0.27 +1.4 486,039 - LU632_RS02435 0.27 +3.6 486,045 - LU632_RS02435 0.27 +1.3 486,049 + LU632_RS02435 0.28 +0.9 486,066 + LU632_RS02435 0.29 -0.0 486,068 + LU632_RS02435 0.30 -2.3 486,068 + LU632_RS02435 0.30 -0.5 486,068 + LU632_RS02435 0.30 +0.5 486,068 + LU632_RS02435 0.30 +1.0 486,167 + LU632_RS02435 0.39 +1.5 486,218 + LU632_RS02435 0.44 +0.2 486,219 - LU632_RS02435 0.44 -3.2 486,219 - LU632_RS02435 0.44 -2.2 486,223 + LU632_RS02435 0.45 +0.5 486,224 - LU632_RS02435 0.45 +0.4 486,314 + LU632_RS02435 0.54 +1.0 486,314 + LU632_RS02435 0.54 -0.3 486,315 - LU632_RS02435 0.54 +4.1 486,315 - LU632_RS02435 0.54 +1.1 486,315 - LU632_RS02435 0.54 -0.5 486,366 - LU632_RS02435 0.59 -1.2 486,374 + LU632_RS02435 0.60 +0.3 486,377 + LU632_RS02435 0.60 +2.5 486,377 + LU632_RS02435 0.60 +1.0 486,377 + LU632_RS02435 0.60 +2.7 486,499 + LU632_RS02435 0.72 -0.5 486,523 + LU632_RS02435 0.74 +2.0 486,618 - LU632_RS02435 0.84 +2.7 486,618 - LU632_RS02435 0.84 -3.6 486,625 + LU632_RS02435 0.84 +5.4 486,625 + LU632_RS02435 0.84 -0.9 486,625 + LU632_RS02435 0.84 -1.5 486,625 + LU632_RS02435 0.84 -0.5 486,625 + LU632_RS02435 0.84 -1.0 486,626 - LU632_RS02435 0.84 +1.5 486,626 - LU632_RS02435 0.84 +0.1 486,626 - LU632_RS02435 0.84 +3.4 486,626 - LU632_RS02435 0.84 +3.1 486,626 - LU632_RS02435 0.84 +0.7 486,626 - LU632_RS02435 0.84 -2.6 486,626 - LU632_RS02435 0.84 -3.0 486,626 - LU632_RS02435 0.84 -1.2 486,635 + LU632_RS02435 0.85 +0.1 486,635 + LU632_RS02435 0.85 -1.2 486,635 + LU632_RS02435 0.85 +1.3 486,635 + LU632_RS02435 0.85 +3.3 486,636 - LU632_RS02435 0.85 +0.7 486,656 + LU632_RS02435 0.87 -2.5 486,791 + +0.7 486,792 - +0.2 486,814 + -4.7 486,814 + +1.0 486,815 - +1.6 486,854 + +0.1 486,854 + -0.4 486,925 - LU632_RS02440 0.18 -0.5 487,012 - LU632_RS02440 0.29 +3.2 487,012 - LU632_RS02440 0.29 -1.9 487,012 - LU632_RS02440 0.29 +3.4 487,027 + LU632_RS02440 0.31 -1.7 487,030 - LU632_RS02440 0.31 +2.1 487,030 - LU632_RS02440 0.31 +1.3 487,047 - LU632_RS02440 0.33 +1.0 487,160 + LU632_RS02440 0.47 -2.0 487,177 + LU632_RS02440 0.49 -2.5 487,178 - LU632_RS02440 0.49 +0.5 487,325 + LU632_RS02440 0.67 +0.2 487,352 + LU632_RS02440 0.71 +2.2 487,353 - LU632_RS02440 0.71 +0.8 487,353 - LU632_RS02440 0.71 -2.8 487,353 - LU632_RS02440 0.71 +0.4 487,439 + LU632_RS02440 0.81 +3.8 487,439 + LU632_RS02440 0.81 -0.7 487,479 - LU632_RS02440 0.86 -0.9 487,514 + -2.9 487,515 - +0.1 487,515 - -0.6 487,518 + -2.0 487,518 + -2.6 487,518 + -1.8 487,518 + +0.3 487,518 + -0.6 487,519 - -2.6 487,519 - +0.1 487,536 - -0.1 487,551 - -0.0 487,569 + -1.9 487,569 + -1.9 487,569 + +1.2 487,624 - +1.8 487,946 + LU632_RS02445 0.43 -2.5 487,947 - LU632_RS02445 0.43 +1.1 487,999 + LU632_RS02445 0.50 +1.1 488,000 - LU632_RS02445 0.50 +0.6 488,000 - LU632_RS02445 0.50 +0.7 488,077 - LU632_RS02445 0.59 +1.7 488,077 - LU632_RS02445 0.59 -2.0 488,099 - LU632_RS02445 0.62 +3.1 488,166 - LU632_RS02445 0.70 +2.0 488,166 - LU632_RS02445 0.70 -0.0 488,206 + LU632_RS02445 0.74 -2.0 488,206 + LU632_RS02445 0.74 -1.9 488,207 - LU632_RS02445 0.75 -0.4 488,207 - LU632_RS02445 0.75 +1.7 488,207 - LU632_RS02445 0.75 +2.6 488,249 + LU632_RS02445 0.80 -0.6 488,250 - LU632_RS02445 0.80 +0.9 488,277 - LU632_RS02445 0.83 +1.6 488,277 - LU632_RS02445 0.83 +4.5 488,280 + LU632_RS02445 0.83 -0.6 488,280 + LU632_RS02445 0.83 +1.1 488,315 - LU632_RS02445 0.87 +2.6 488,315 - LU632_RS02445 0.87 +0.6 488,337 + -0.5 488,337 + +0.5 488,338 - +0.7 488,359 - +3.4 488,361 + +0.9 488,378 - -1.0 488,398 + +1.4 488,398 + +1.1 488,398 + -0.5 488,477 + -2.0 488,528 + LU632_RS02450 0.50 -0.5 488,550 + LU632_RS02450 0.70 -1.5
Or see this region's nucleotide sequence