Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02275 and LU632_RS02280 are separated by 230 nucleotides LU632_RS02280 and LU632_RS02285 overlap by 1 nucleotides LU632_RS02285 and LU632_RS02290 are separated by 2 nucleotides LU632_RS02290 and LU632_RS02295 are separated by 35 nucleotides LU632_RS02295 and mzrA are separated by 165 nucleotides
LU632_RS02275: LU632_RS02275 - DoxX family protein, at 449,912 to 450,304
_RS02275
LU632_RS02280: LU632_RS02280 - YqjK-like family protein, at 450,535 to 450,816
_RS02280
LU632_RS02285: LU632_RS02285 - phage holin family protein, at 450,816 to 451,208
_RS02285
LU632_RS02290: LU632_RS02290 - YqjD family protein, at 451,211 to 451,516
_RS02290
LU632_RS02295: LU632_RS02295 - DUF1090 domain-containing protein, at 451,552 to 451,926
_RS02295
LU632_RS02300: mzrA - EnvZ/OmpR regulon moderator MzrA, at 452,092 to 452,520
mzrA
LU632_RS02305: LU632_RS02305 - DedA family protein, at 452,490 to 453,152
_RS02305
Position (kb) 451
452 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 450.299 kb on - strand at 450.308 kb on + strand at 450.368 kb on - strand at 450.551 kb on + strand at 450.574 kb on - strand, within LU632_RS02280 at 450.707 kb on + strand, within LU632_RS02280 at 450.802 kb on + strand at 450.802 kb on + strand at 450.802 kb on + strand at 450.803 kb on - strand at 450.803 kb on - strand at 450.832 kb on - strand at 450.849 kb on - strand at 450.982 kb on - strand, within LU632_RS02285 at 450.982 kb on - strand, within LU632_RS02285 at 450.982 kb on - strand, within LU632_RS02285 at 450.993 kb on - strand, within LU632_RS02285 at 450.995 kb on + strand, within LU632_RS02285 at 450.995 kb on + strand, within LU632_RS02285 at 450.996 kb on - strand, within LU632_RS02285 at 450.999 kb on + strand, within LU632_RS02285 at 451.029 kb on - strand, within LU632_RS02285 at 451.163 kb on + strand, within LU632_RS02285 at 451.313 kb on + strand, within LU632_RS02290 at 451.369 kb on + strand, within LU632_RS02290 at 451.443 kb on - strand, within LU632_RS02290 at 451.446 kb on - strand, within LU632_RS02290 at 451.516 kb on + strand at 451.516 kb on + strand at 451.516 kb on + strand at 451.516 kb on + strand at 451.516 kb on + strand at 451.520 kb on + strand at 451.521 kb on - strand at 451.521 kb on - strand at 451.528 kb on + strand at 451.528 kb on + strand at 451.529 kb on - strand at 451.532 kb on + strand at 451.681 kb on + strand, within LU632_RS02295 at 451.726 kb on + strand, within LU632_RS02295 at 451.783 kb on + strand, within LU632_RS02295 at 451.891 kb on - strand at 451.919 kb on + strand at 451.920 kb on - strand at 451.920 kb on - strand at 451.920 kb on - strand at 451.936 kb on + strand at 451.937 kb on - strand at 451.977 kb on + strand at 452.004 kb on - strand at 452.040 kb on + strand at 452.041 kb on - strand at 452.055 kb on + strand at 452.240 kb on - strand, within mzrA at 452.240 kb on - strand, within mzrA at 452.269 kb on - strand, within mzrA at 452.281 kb on + strand, within mzrA at 452.282 kb on - strand, within mzrA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2) remove 450,299 - +1.4 450,308 + +1.4 450,368 - -1.5 450,551 + +0.7 450,574 - LU632_RS02280 0.14 -1.5 450,707 + LU632_RS02280 0.61 +1.4 450,802 + -2.0 450,802 + +0.6 450,802 + -2.8 450,803 - +1.0 450,803 - -0.4 450,832 - +0.5 450,849 - -0.7 450,982 - LU632_RS02285 0.42 +1.5 450,982 - LU632_RS02285 0.42 -3.5 450,982 - LU632_RS02285 0.42 -2.9 450,993 - LU632_RS02285 0.45 +2.1 450,995 + LU632_RS02285 0.46 +4.4 450,995 + LU632_RS02285 0.46 -0.2 450,996 - LU632_RS02285 0.46 -0.8 450,999 + LU632_RS02285 0.47 +0.6 451,029 - LU632_RS02285 0.54 -0.4 451,163 + LU632_RS02285 0.88 -2.8 451,313 + LU632_RS02290 0.33 +2.5 451,369 + LU632_RS02290 0.52 +0.3 451,443 - LU632_RS02290 0.76 +1.2 451,446 - LU632_RS02290 0.77 -0.4 451,516 + -2.0 451,516 + -2.8 451,516 + +1.2 451,516 + -1.2 451,516 + +1.8 451,520 + +0.3 451,521 - -2.8 451,521 - -2.9 451,528 + +1.4 451,528 + -0.3 451,529 - +0.0 451,532 + -0.0 451,681 + LU632_RS02295 0.34 +0.5 451,726 + LU632_RS02295 0.46 -1.2 451,783 + LU632_RS02295 0.62 +1.7 451,891 - -0.1 451,919 + -1.2 451,920 - -0.8 451,920 - +1.3 451,920 - -0.7 451,936 + +3.0 451,937 - -2.3 451,977 + +0.7 452,004 - +0.4 452,040 + -0.2 452,041 - +3.3 452,055 + -0.5 452,240 - mzrA LU632_RS02300 0.34 -0.6 452,240 - mzrA LU632_RS02300 0.34 +1.7 452,269 - mzrA LU632_RS02300 0.41 +0.6 452,281 + mzrA LU632_RS02300 0.44 +2.4 452,282 - mzrA LU632_RS02300 0.44 +0.8
Or see this region's nucleotide sequence