Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01895 and blc are separated by 312 nucleotides blc and frdD are separated by 76 nucleotides frdD and frdC overlap by 4 nucleotides frdC and LU632_RS01915 are separated by 11 nucleotides
LU632_RS01895: LU632_RS01895 - ECN family pore-forming entericidin, at 363,215 to 363,349
_RS01895
LU632_RS01900: blc - outer membrane lipoprotein Blc, at 363,662 to 364,186
blc
LU632_RS01905: frdD - fumarate reductase subunit FrdD, at 364,263 to 364,616
frdD
LU632_RS01910: frdC - fumarate reductase subunit FrdC, at 364,613 to 365,017
frdC
LU632_RS01915: LU632_RS01915 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 365,029 to 365,763
_RS01915
Position (kb) 364
365 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 363.312 kb on + strand, within LU632_RS01895 at 363.312 kb on + strand, within LU632_RS01895 at 363.313 kb on - strand, within LU632_RS01895 at 363.348 kb on - strand at 363.350 kb on + strand at 363.353 kb on + strand at 363.366 kb on + strand at 363.463 kb on + strand at 363.465 kb on + strand at 363.465 kb on + strand at 363.598 kb on + strand at 363.664 kb on - strand at 363.664 kb on - strand at 363.736 kb on + strand, within blc at 363.739 kb on + strand, within blc at 363.739 kb on + strand, within blc at 363.740 kb on - strand, within blc at 363.785 kb on - strand, within blc at 363.852 kb on + strand, within blc at 363.909 kb on + strand, within blc at 363.952 kb on + strand, within blc at 363.952 kb on + strand, within blc at 363.952 kb on + strand, within blc at 363.952 kb on + strand, within blc at 363.952 kb on + strand, within blc at 363.952 kb on + strand, within blc at 363.953 kb on - strand, within blc at 363.953 kb on - strand, within blc at 363.953 kb on - strand, within blc at 364.074 kb on + strand, within blc at 364.075 kb on - strand, within blc at 364.107 kb on - strand, within blc at 364.123 kb on + strand, within blc at 364.123 kb on + strand, within blc at 364.123 kb on + strand, within blc at 364.186 kb on + strand at 364.186 kb on + strand at 364.186 kb on + strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.187 kb on - strand at 364.199 kb on + strand at 364.219 kb on + strand at 364.221 kb on + strand at 364.221 kb on + strand at 364.265 kb on - strand at 364.284 kb on + strand at 364.285 kb on - strand at 364.285 kb on - strand at 364.352 kb on + strand, within frdD at 364.468 kb on + strand, within frdD at 364.468 kb on + strand, within frdD at 364.493 kb on + strand, within frdD at 364.494 kb on - strand, within frdD at 364.506 kb on + strand, within frdD at 364.616 kb on + strand at 364.726 kb on + strand, within frdC at 364.727 kb on - strand, within frdC at 364.768 kb on + strand, within frdC at 364.769 kb on - strand, within frdC at 364.798 kb on + strand, within frdC at 364.799 kb on - strand, within frdC at 364.812 kb on - strand, within frdC at 364.939 kb on + strand, within frdC at 364.940 kb on - strand, within frdC at 364.941 kb on + strand, within frdC at 364.941 kb on + strand, within frdC at 364.942 kb on - strand, within frdC at 364.996 kb on - strand at 365.135 kb on + strand, within LU632_RS01915 at 365.148 kb on + strand, within LU632_RS01915 at 365.224 kb on - strand, within LU632_RS01915 at 365.336 kb on + strand, within LU632_RS01915 at 365.337 kb on - strand, within LU632_RS01915 at 365.405 kb on + strand, within LU632_RS01915 at 365.405 kb on + strand, within LU632_RS01915 at 365.405 kb on + strand, within LU632_RS01915 at 365.406 kb on - strand, within LU632_RS01915 at 365.406 kb on - strand, within LU632_RS01915 at 365.615 kb on + strand, within LU632_RS01915 at 365.615 kb on + strand, within LU632_RS01915 at 365.616 kb on - strand, within LU632_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2) remove 363,312 + LU632_RS01895 0.72 +0.3 363,312 + LU632_RS01895 0.72 +1.5 363,313 - LU632_RS01895 0.73 -0.8 363,348 - +1.2 363,350 + -0.0 363,353 + +1.0 363,366 + -3.5 363,463 + +1.6 363,465 + +1.3 363,465 + -2.1 363,598 + -0.0 363,664 - -2.5 363,664 - +0.8 363,736 + blc LU632_RS01900 0.14 +1.7 363,739 + blc LU632_RS01900 0.15 +0.8 363,739 + blc LU632_RS01900 0.15 -3.7 363,740 - blc LU632_RS01900 0.15 +0.0 363,785 - blc LU632_RS01900 0.23 +1.2 363,852 + blc LU632_RS01900 0.36 +1.9 363,909 + blc LU632_RS01900 0.47 -0.9 363,952 + blc LU632_RS01900 0.55 -2.7 363,952 + blc LU632_RS01900 0.55 +1.2 363,952 + blc LU632_RS01900 0.55 +1.5 363,952 + blc LU632_RS01900 0.55 +4.8 363,952 + blc LU632_RS01900 0.55 +1.1 363,952 + blc LU632_RS01900 0.55 +0.2 363,953 - blc LU632_RS01900 0.55 +0.9 363,953 - blc LU632_RS01900 0.55 +0.2 363,953 - blc LU632_RS01900 0.55 -2.5 364,074 + blc LU632_RS01900 0.78 +2.9 364,075 - blc LU632_RS01900 0.79 -3.6 364,107 - blc LU632_RS01900 0.85 -3.4 364,123 + blc LU632_RS01900 0.88 +1.7 364,123 + blc LU632_RS01900 0.88 +2.0 364,123 + blc LU632_RS01900 0.88 +0.2 364,186 + +0.1 364,186 + -2.1 364,186 + +0.7 364,187 - +0.3 364,187 - +2.3 364,187 - +1.0 364,187 - +0.2 364,187 - -0.3 364,187 - +1.5 364,187 - -0.1 364,187 - -0.4 364,187 - -3.6 364,187 - -3.8 364,199 + -0.1 364,219 + +0.9 364,221 + +0.7 364,221 + -3.5 364,265 - +3.5 364,284 + -2.6 364,285 - +0.6 364,285 - -1.8 364,352 + frdD LU632_RS01905 0.25 -1.6 364,468 + frdD LU632_RS01905 0.58 -3.1 364,468 + frdD LU632_RS01905 0.58 +1.0 364,493 + frdD LU632_RS01905 0.65 -3.1 364,494 - frdD LU632_RS01905 0.65 +1.8 364,506 + frdD LU632_RS01905 0.69 -1.1 364,616 + +0.7 364,726 + frdC LU632_RS01910 0.28 -0.8 364,727 - frdC LU632_RS01910 0.28 +2.4 364,768 + frdC LU632_RS01910 0.38 -1.4 364,769 - frdC LU632_RS01910 0.39 +0.8 364,798 + frdC LU632_RS01910 0.46 +0.0 364,799 - frdC LU632_RS01910 0.46 +1.0 364,812 - frdC LU632_RS01910 0.49 +1.2 364,939 + frdC LU632_RS01910 0.80 -0.2 364,940 - frdC LU632_RS01910 0.81 +1.8 364,941 + frdC LU632_RS01910 0.81 +2.4 364,941 + frdC LU632_RS01910 0.81 -1.1 364,942 - frdC LU632_RS01910 0.81 -3.2 364,996 - +0.2 365,135 + LU632_RS01915 0.14 +2.2 365,148 + LU632_RS01915 0.16 +1.6 365,224 - LU632_RS01915 0.27 -1.4 365,336 + LU632_RS01915 0.42 -1.0 365,337 - LU632_RS01915 0.42 -2.5 365,405 + LU632_RS01915 0.51 -0.3 365,405 + LU632_RS01915 0.51 -0.3 365,405 + LU632_RS01915 0.51 +1.1 365,406 - LU632_RS01915 0.51 -3.3 365,406 - LU632_RS01915 0.51 -2.3 365,615 + LU632_RS01915 0.80 -3.3 365,615 + LU632_RS01915 0.80 -1.4 365,616 - LU632_RS01915 0.80 +2.4
Or see this region's nucleotide sequence