Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01665

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01660 and LU632_RS01665 overlap by 1 nucleotidesLU632_RS01665 and LU632_RS01670 are separated by 154 nucleotidesLU632_RS01670 and LU632_RS01675 are separated by 12 nucleotides LU632_RS01655: LU632_RS01655 - phage tail protein I, at 326,642 to 327,256 _RS01655 LU632_RS01660: LU632_RS01660 - phage tail protein, at 327,246 to 328,247 _RS01660 LU632_RS01665: LU632_RS01665 - tail fiber assembly protein, at 328,247 to 328,843 _RS01665 LU632_RS01670: LU632_RS01670 - phage tail protein, at 328,998 to 329,486 _RS01670 LU632_RS01675: LU632_RS01675 - phage tail tape measure protein, at 329,499 to 332,471 _RS01675 Position (kb) 328 329Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 327.255 kb on - strandat 327.255 kb on - strandat 327.259 kb on - strandat 327.453 kb on - strand, within LU632_RS01660at 327.464 kb on + strand, within LU632_RS01660at 327.573 kb on + strand, within LU632_RS01660at 327.658 kb on + strand, within LU632_RS01660at 327.697 kb on - strand, within LU632_RS01660at 327.729 kb on + strand, within LU632_RS01660at 327.729 kb on + strand, within LU632_RS01660at 327.730 kb on - strand, within LU632_RS01660at 327.730 kb on - strand, within LU632_RS01660at 327.730 kb on - strand, within LU632_RS01660at 327.730 kb on - strand, within LU632_RS01660at 327.755 kb on + strand, within LU632_RS01660at 327.783 kb on + strand, within LU632_RS01660at 327.800 kb on + strand, within LU632_RS01660at 327.801 kb on - strand, within LU632_RS01660at 327.806 kb on + strand, within LU632_RS01660at 327.806 kb on + strand, within LU632_RS01660at 327.807 kb on - strand, within LU632_RS01660at 327.807 kb on - strand, within LU632_RS01660at 327.807 kb on - strand, within LU632_RS01660at 327.807 kb on - strand, within LU632_RS01660at 327.807 kb on - strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.811 kb on - strand, within LU632_RS01660at 327.811 kb on - strand, within LU632_RS01660at 327.811 kb on - strand, within LU632_RS01660at 327.811 kb on - strand, within LU632_RS01660at 327.813 kb on - strand, within LU632_RS01660at 328.305 kb on + strandat 328.393 kb on + strand, within LU632_RS01665at 328.394 kb on - strand, within LU632_RS01665at 328.394 kb on - strand, within LU632_RS01665at 328.394 kb on - strand, within LU632_RS01665at 328.464 kb on - strand, within LU632_RS01665at 328.493 kb on + strand, within LU632_RS01665at 328.494 kb on - strand, within LU632_RS01665at 328.494 kb on - strand, within LU632_RS01665at 328.525 kb on + strand, within LU632_RS01665at 328.581 kb on - strand, within LU632_RS01665at 328.585 kb on + strand, within LU632_RS01665at 328.586 kb on - strand, within LU632_RS01665at 328.716 kb on + strand, within LU632_RS01665at 328.716 kb on + strand, within LU632_RS01665at 328.716 kb on + strand, within LU632_RS01665at 328.716 kb on + strand, within LU632_RS01665at 328.717 kb on - strand, within LU632_RS01665at 328.722 kb on + strand, within LU632_RS01665at 328.723 kb on - strand, within LU632_RS01665at 328.772 kb on + strand, within LU632_RS01665at 328.776 kb on + strand, within LU632_RS01665at 328.776 kb on + strand, within LU632_RS01665at 328.776 kb on + strand, within LU632_RS01665at 328.777 kb on - strand, within LU632_RS01665at 328.842 kb on - strandat 328.842 kb on - strandat 328.893 kb on - strandat 328.899 kb on + strandat 328.925 kb on + strandat 328.935 kb on + strandat 328.985 kb on + strandat 328.985 kb on + strandat 329.035 kb on + strandat 329.106 kb on + strand, within LU632_RS01670at 329.206 kb on - strand, within LU632_RS01670at 329.206 kb on - strand, within LU632_RS01670at 329.209 kb on + strand, within LU632_RS01670at 329.209 kb on + strand, within LU632_RS01670at 329.209 kb on + strand, within LU632_RS01670at 329.209 kb on + strand, within LU632_RS01670at 329.210 kb on - strand, within LU632_RS01670at 329.210 kb on - strand, within LU632_RS01670at 329.210 kb on - strand, within LU632_RS01670at 329.210 kb on - strand, within LU632_RS01670at 329.210 kb on - strand, within LU632_RS01670at 329.264 kb on - strand, within LU632_RS01670at 329.264 kb on - strand, within LU632_RS01670at 329.362 kb on + strand, within LU632_RS01670at 329.362 kb on + strand, within LU632_RS01670at 329.363 kb on - strand, within LU632_RS01670at 329.363 kb on - strand, within LU632_RS01670at 329.363 kb on - strand, within LU632_RS01670at 329.622 kb on + strandat 329.622 kb on + strandat 329.623 kb on - strandat 329.623 kb on - strandat 329.664 kb on - strandat 329.664 kb on - strandat 329.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
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327,255 - -2.4
327,255 - +0.5
327,259 - +2.2
327,453 - LU632_RS01660 0.21 +0.9
327,464 + LU632_RS01660 0.22 -1.5
327,573 + LU632_RS01660 0.33 -0.4
327,658 + LU632_RS01660 0.41 +2.4
327,697 - LU632_RS01660 0.45 -1.8
327,729 + LU632_RS01660 0.48 +4.4
327,729 + LU632_RS01660 0.48 +2.0
327,730 - LU632_RS01660 0.48 +0.6
327,730 - LU632_RS01660 0.48 -1.1
327,730 - LU632_RS01660 0.48 +1.0
327,730 - LU632_RS01660 0.48 +1.1
327,755 + LU632_RS01660 0.51 -2.3
327,783 + LU632_RS01660 0.54 +0.9
327,800 + LU632_RS01660 0.55 +0.6
327,801 - LU632_RS01660 0.55 -1.6
327,806 + LU632_RS01660 0.56 +0.2
327,806 + LU632_RS01660 0.56 +1.4
327,807 - LU632_RS01660 0.56 +0.4
327,807 - LU632_RS01660 0.56 -1.6
327,807 - LU632_RS01660 0.56 -3.3
327,807 - LU632_RS01660 0.56 -2.0
327,807 - LU632_RS01660 0.56 +0.4
327,810 + LU632_RS01660 0.56 -0.3
327,810 + LU632_RS01660 0.56 -1.8
327,810 + LU632_RS01660 0.56 +0.9
327,810 + LU632_RS01660 0.56 -2.3
327,810 + LU632_RS01660 0.56 +0.9
327,810 + LU632_RS01660 0.56 -1.1
327,810 + LU632_RS01660 0.56 -3.6
327,810 + LU632_RS01660 0.56 +1.1
327,810 + LU632_RS01660 0.56 -0.8
327,811 - LU632_RS01660 0.56 +0.4
327,811 - LU632_RS01660 0.56 -2.4
327,811 - LU632_RS01660 0.56 +0.1
327,811 - LU632_RS01660 0.56 +1.2
327,813 - LU632_RS01660 0.57 -0.3
328,305 + -1.2
328,393 + LU632_RS01665 0.24 -0.4
328,394 - LU632_RS01665 0.25 +0.3
328,394 - LU632_RS01665 0.25 -4.1
328,394 - LU632_RS01665 0.25 +0.1
328,464 - LU632_RS01665 0.36 -0.5
328,493 + LU632_RS01665 0.41 -0.4
328,494 - LU632_RS01665 0.41 +0.4
328,494 - LU632_RS01665 0.41 +1.8
328,525 + LU632_RS01665 0.47 +1.9
328,581 - LU632_RS01665 0.56 -0.6
328,585 + LU632_RS01665 0.57 -1.3
328,586 - LU632_RS01665 0.57 -1.7
328,716 + LU632_RS01665 0.79 +0.6
328,716 + LU632_RS01665 0.79 +0.6
328,716 + LU632_RS01665 0.79 -1.7
328,716 + LU632_RS01665 0.79 -1.6
328,717 - LU632_RS01665 0.79 -2.6
328,722 + LU632_RS01665 0.80 +0.8
328,723 - LU632_RS01665 0.80 -1.1
328,772 + LU632_RS01665 0.88 +0.2
328,776 + LU632_RS01665 0.89 +1.2
328,776 + LU632_RS01665 0.89 -0.0
328,776 + LU632_RS01665 0.89 +3.1
328,777 - LU632_RS01665 0.89 +1.7
328,842 - +0.8
328,842 - +2.3
328,893 - -1.4
328,899 + +1.0
328,925 + -1.4
328,935 + -2.8
328,985 + -0.2
328,985 + +0.8
329,035 + +1.9
329,106 + LU632_RS01670 0.22 -0.2
329,206 - LU632_RS01670 0.43 -0.8
329,206 - LU632_RS01670 0.43 +0.5
329,209 + LU632_RS01670 0.43 -1.4
329,209 + LU632_RS01670 0.43 -1.4
329,209 + LU632_RS01670 0.43 -2.1
329,209 + LU632_RS01670 0.43 +0.9
329,210 - LU632_RS01670 0.43 -1.1
329,210 - LU632_RS01670 0.43 -1.2
329,210 - LU632_RS01670 0.43 +1.9
329,210 - LU632_RS01670 0.43 -0.4
329,210 - LU632_RS01670 0.43 +0.7
329,264 - LU632_RS01670 0.54 +1.8
329,264 - LU632_RS01670 0.54 +2.7
329,362 + LU632_RS01670 0.74 -1.6
329,362 + LU632_RS01670 0.74 +1.5
329,363 - LU632_RS01670 0.75 +1.5
329,363 - LU632_RS01670 0.75 +0.3
329,363 - LU632_RS01670 0.75 +1.2
329,622 + -1.0
329,622 + -1.1
329,623 - -1.1
329,623 - -0.0
329,664 - +0.4
329,664 - +0.1
329,754 - -1.7

Or see this region's nucleotide sequence