Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpM and LU632_RS01605 are separated by 96 nucleotides LU632_RS01605 and LU632_RS01610 overlap by 1 nucleotides LU632_RS01610 and LU632_RS01615 overlap by 10 nucleotides LU632_RS01615 and LU632_RS01620 overlap by 17 nucleotides LU632_RS01620 and LU632_RS01625 overlap by 4 nucleotides
LU632_RS01600: gpM - phage terminase small subunit, at 320,716 to 321,573
gpM
LU632_RS01605: LU632_RS01605 - head completion/stabilization protein, at 321,670 to 322,194
_RS01605
LU632_RS01610: LU632_RS01610 - tail protein X, at 322,194 to 322,394
_RS01610
LU632_RS01615: LU632_RS01615 - hypothetical protein, at 322,385 to 322,687
_RS01615
LU632_RS01620: LU632_RS01620 - lysozyme, at 322,671 to 323,216
_RS01620
LU632_RS01625: LU632_RS01625 - DUF2514 domain-containing protein, at 323,213 to 323,728
_RS01625
Position (kb) 322
323 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 321.207 kb on + strand, within gpM at 321.207 kb on + strand, within gpM at 321.208 kb on - strand, within gpM at 321.208 kb on - strand, within gpM at 321.610 kb on + strand at 321.665 kb on + strand at 321.690 kb on + strand at 321.690 kb on + strand at 321.691 kb on - strand at 321.935 kb on + strand, within LU632_RS01605 at 321.935 kb on + strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 322.282 kb on + strand, within LU632_RS01610 at 322.283 kb on - strand, within LU632_RS01610 at 322.378 kb on + strand at 322.379 kb on - strand at 322.379 kb on - strand at 322.379 kb on - strand at 322.774 kb on + strand, within LU632_RS01620 at 322.797 kb on - strand, within LU632_RS01620 at 322.797 kb on - strand, within LU632_RS01620 at 322.872 kb on + strand, within LU632_RS01620 at 322.931 kb on + strand, within LU632_RS01620 at 322.932 kb on - strand, within LU632_RS01620 at 322.956 kb on + strand, within LU632_RS01620 at 322.956 kb on + strand, within LU632_RS01620 at 322.956 kb on + strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.958 kb on + strand, within LU632_RS01620 at 323.005 kb on + strand, within LU632_RS01620 at 323.005 kb on + strand, within LU632_RS01620 at 323.005 kb on + strand, within LU632_RS01620 at 323.006 kb on - strand, within LU632_RS01620 at 323.006 kb on - strand, within LU632_RS01620 at 323.006 kb on - strand, within LU632_RS01620 at 323.006 kb on - strand, within LU632_RS01620 at 323.012 kb on + strand, within LU632_RS01620 at 323.013 kb on - strand, within LU632_RS01620 at 323.063 kb on + strand, within LU632_RS01620 at 323.084 kb on - strand, within LU632_RS01620 at 323.239 kb on - strand at 323.283 kb on - strand, within LU632_RS01625 at 323.283 kb on - strand, within LU632_RS01625 at 323.283 kb on - strand, within LU632_RS01625 at 323.283 kb on - strand, within LU632_RS01625 at 323.284 kb on + strand, within LU632_RS01625 at 323.284 kb on + strand, within LU632_RS01625 at 323.284 kb on + strand, within LU632_RS01625 at 323.284 kb on + strand, within LU632_RS01625 at 323.285 kb on - strand, within LU632_RS01625 at 323.285 kb on - strand, within LU632_RS01625 at 323.285 kb on - strand, within LU632_RS01625
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2) remove 321,207 + gpM LU632_RS01600 0.57 -2.1 321,207 + gpM LU632_RS01600 0.57 -1.9 321,208 - gpM LU632_RS01600 0.57 -1.1 321,208 - gpM LU632_RS01600 0.57 -1.4 321,610 + +0.2 321,665 + -0.8 321,690 + -3.5 321,690 + +0.6 321,691 - -0.8 321,935 + LU632_RS01605 0.50 +0.2 321,935 + LU632_RS01605 0.50 +1.7 321,936 - LU632_RS01605 0.51 +1.0 321,936 - LU632_RS01605 0.51 +1.2 321,936 - LU632_RS01605 0.51 -1.4 321,936 - LU632_RS01605 0.51 +1.9 322,282 + LU632_RS01610 0.44 -1.6 322,283 - LU632_RS01610 0.44 -3.2 322,378 + -1.9 322,379 - -1.7 322,379 - -3.8 322,379 - +1.1 322,774 + LU632_RS01620 0.19 +0.2 322,797 - LU632_RS01620 0.23 +1.3 322,797 - LU632_RS01620 0.23 -1.2 322,872 + LU632_RS01620 0.37 -1.4 322,931 + LU632_RS01620 0.48 -0.7 322,932 - LU632_RS01620 0.48 +1.2 322,956 + LU632_RS01620 0.52 +0.7 322,956 + LU632_RS01620 0.52 +1.5 322,956 + LU632_RS01620 0.52 -2.2 322,957 - LU632_RS01620 0.52 -2.1 322,957 - LU632_RS01620 0.52 +1.0 322,957 - LU632_RS01620 0.52 +1.0 322,957 - LU632_RS01620 0.52 -1.4 322,957 - LU632_RS01620 0.52 +2.5 322,958 + LU632_RS01620 0.53 +1.4 323,005 + LU632_RS01620 0.61 +0.4 323,005 + LU632_RS01620 0.61 -1.4 323,005 + LU632_RS01620 0.61 +0.5 323,006 - LU632_RS01620 0.61 +0.2 323,006 - LU632_RS01620 0.61 +3.3 323,006 - LU632_RS01620 0.61 +0.9 323,006 - LU632_RS01620 0.61 +0.6 323,012 + LU632_RS01620 0.62 +0.5 323,013 - LU632_RS01620 0.63 +0.8 323,063 + LU632_RS01620 0.72 -0.9 323,084 - LU632_RS01620 0.76 +2.4 323,239 - -0.8 323,283 - LU632_RS01625 0.14 +0.2 323,283 - LU632_RS01625 0.14 -2.7 323,283 - LU632_RS01625 0.14 -2.1 323,283 - LU632_RS01625 0.14 +2.2 323,284 + LU632_RS01625 0.14 -2.7 323,284 + LU632_RS01625 0.14 -0.8 323,284 + LU632_RS01625 0.14 -0.4 323,284 + LU632_RS01625 0.14 +1.4 323,285 - LU632_RS01625 0.14 -1.1 323,285 - LU632_RS01625 0.14 +0.1 323,285 - LU632_RS01625 0.14 +1.6
Or see this region's nucleotide sequence