Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01370 and LU632_RS01375 are separated by 127 nucleotides LU632_RS01375 and LU632_RS01380 overlap by 14 nucleotides LU632_RS01380 and LU632_RS01385 are separated by 296 nucleotides LU632_RS01385 and LU632_RS01390 are separated by 0 nucleotides LU632_RS01390 and LU632_RS01395 are separated by 36 nucleotides LU632_RS01395 and LU632_RS01400 are separated by 11 nucleotides LU632_RS01400 and LU632_RS01405 are separated by 85 nucleotides
LU632_RS01370: LU632_RS01370 - IS1 family transposase, at 287,143 to 287,840
_RS01370
LU632_RS01375: LU632_RS01375 - type II toxin-antitoxin system RelE/ParE family toxin, at 287,968 to 288,243
_RS01375
LU632_RS01380: LU632_RS01380 - hypothetical protein, at 288,230 to 288,430
_RS01380
LU632_RS01385: LU632_RS01385 - hypothetical protein, at 288,727 to 289,080
_RS01385
LU632_RS01390: LU632_RS01390 - TIGR03758 family integrating conjugative element protein, at 289,081 to 289,209
_RS01390
LU632_RS01395: LU632_RS01395 - TIGR03745 family integrating conjugative element membrane protein, at 289,246 to 289,623
_RS01395
LU632_RS01400: LU632_RS01400 - TIGR03750 family conjugal transfer protein, at 289,635 to 289,724
_RS01400
LU632_RS01405: LU632_RS01405 - TIGR03749 family integrating conjugative element protein, at 289,810 to 290,676
_RS01405
Position (kb) 288
289
290 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 287.901 kb on - strand at 287.901 kb on - strand at 287.902 kb on + strand at 287.902 kb on + strand at 287.903 kb on - strand at 287.903 kb on - strand at 287.910 kb on - strand at 287.915 kb on + strand at 288.040 kb on + strand, within LU632_RS01375 at 288.044 kb on + strand, within LU632_RS01375 at 288.102 kb on - strand, within LU632_RS01375 at 288.133 kb on + strand, within LU632_RS01375 at 288.133 kb on + strand, within LU632_RS01375 at 288.133 kb on + strand, within LU632_RS01375 at 288.134 kb on + strand, within LU632_RS01375 at 288.134 kb on - strand, within LU632_RS01375 at 288.134 kb on - strand, within LU632_RS01375 at 288.134 kb on - strand, within LU632_RS01375 at 288.134 kb on - strand, within LU632_RS01375 at 288.134 kb on - strand, within LU632_RS01375 at 288.134 kb on - strand, within LU632_RS01375 at 288.136 kb on + strand, within LU632_RS01375 at 288.137 kb on - strand, within LU632_RS01375 at 288.468 kb on - strand at 288.515 kb on - strand at 288.515 kb on - strand at 288.724 kb on + strand at 288.724 kb on + strand at 288.725 kb on - strand at 288.726 kb on + strand at 288.726 kb on + strand at 288.727 kb on - strand at 288.727 kb on - strand at 288.727 kb on - strand at 288.752 kb on + strand at 289.000 kb on - strand, within LU632_RS01385 at 289.215 kb on - strand at 289.227 kb on - strand at 289.227 kb on - strand at 289.328 kb on + strand, within LU632_RS01395 at 289.329 kb on - strand, within LU632_RS01395 at 289.332 kb on + strand, within LU632_RS01395 at 289.332 kb on + strand, within LU632_RS01395 at 289.333 kb on - strand, within LU632_RS01395 at 289.415 kb on - strand, within LU632_RS01395 at 289.420 kb on - strand, within LU632_RS01395 at 289.489 kb on - strand, within LU632_RS01395 at 289.489 kb on - strand, within LU632_RS01395 at 289.495 kb on - strand, within LU632_RS01395 at 289.715 kb on + strand, within LU632_RS01400 at 289.936 kb on - strand, within LU632_RS01405 at 289.936 kb on - strand, within LU632_RS01405 at 289.983 kb on + strand, within LU632_RS01405
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2) remove 287,901 - -1.3 287,901 - +0.9 287,902 + -0.1 287,902 + +2.0 287,903 - -1.6 287,903 - +3.6 287,910 - -1.1 287,915 + +0.1 288,040 + LU632_RS01375 0.26 -0.1 288,044 + LU632_RS01375 0.28 +2.4 288,102 - LU632_RS01375 0.49 -1.7 288,133 + LU632_RS01375 0.60 -0.3 288,133 + LU632_RS01375 0.60 +4.2 288,133 + LU632_RS01375 0.60 -0.6 288,134 + LU632_RS01375 0.60 +0.2 288,134 - LU632_RS01375 0.60 +0.8 288,134 - LU632_RS01375 0.60 +0.6 288,134 - LU632_RS01375 0.60 +0.8 288,134 - LU632_RS01375 0.60 +3.9 288,134 - LU632_RS01375 0.60 +0.9 288,134 - LU632_RS01375 0.60 -1.3 288,136 + LU632_RS01375 0.61 -0.5 288,137 - LU632_RS01375 0.61 -3.7 288,468 - +0.1 288,515 - -0.7 288,515 - +2.6 288,724 + +3.5 288,724 + -0.8 288,725 - +2.0 288,726 + -0.4 288,726 + +1.0 288,727 - -1.2 288,727 - +0.1 288,727 - +0.3 288,752 + -0.7 289,000 - LU632_RS01385 0.77 -3.7 289,215 - +2.9 289,227 - -2.6 289,227 - -1.7 289,328 + LU632_RS01395 0.22 +0.2 289,329 - LU632_RS01395 0.22 +1.0 289,332 + LU632_RS01395 0.23 -0.4 289,332 + LU632_RS01395 0.23 -1.6 289,333 - LU632_RS01395 0.23 +0.3 289,415 - LU632_RS01395 0.45 -4.1 289,420 - LU632_RS01395 0.46 +0.6 289,489 - LU632_RS01395 0.64 +0.9 289,489 - LU632_RS01395 0.64 -0.5 289,495 - LU632_RS01395 0.66 -1.1 289,715 + LU632_RS01400 0.89 -1.3 289,936 - LU632_RS01405 0.15 -1.3 289,936 - LU632_RS01405 0.15 +1.1 289,983 + LU632_RS01405 0.20 -0.3
Or see this region's nucleotide sequence