Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00850 and LU632_RS00855 are separated by 519 nucleotides LU632_RS00855 and LU632_RS00860 are separated by 119 nucleotides LU632_RS00860 and LU632_RS00865 are separated by 234 nucleotides
LU632_RS00850: LU632_RS00850 - GNAT family N-acetyltransferase, at 185,400 to 186,524
_RS00850
LU632_RS00855: LU632_RS00855 - helix-turn-helix domain-containing protein, at 187,044 to 187,376
_RS00855
LU632_RS00860: LU632_RS00860 - TIGR00645 family protein, at 187,496 to 188,002
_RS00860
LU632_RS00865: LU632_RS00865 - alpha/beta hydrolase, at 188,237 to 189,154
_RS00865
Position (kb) 187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 186.667 kb on + strand at 186.668 kb on - strand at 186.674 kb on + strand at 186.729 kb on - strand at 186.790 kb on + strand at 186.825 kb on - strand at 186.840 kb on + strand at 186.841 kb on - strand at 186.917 kb on + strand at 186.924 kb on + strand at 186.925 kb on - strand at 186.925 kb on - strand at 186.953 kb on + strand at 186.961 kb on + strand at 187.003 kb on + strand at 187.007 kb on + strand at 187.007 kb on + strand at 187.019 kb on + strand at 187.251 kb on - strand, within LU632_RS00855 at 187.257 kb on - strand, within LU632_RS00855 at 187.316 kb on + strand, within LU632_RS00855 at 187.352 kb on + strand at 187.374 kb on + strand at 187.436 kb on - strand at 187.436 kb on - strand at 187.444 kb on + strand at 187.457 kb on - strand at 187.461 kb on + strand at 187.461 kb on + strand at 187.461 kb on + strand at 187.461 kb on + strand at 187.462 kb on - strand at 187.476 kb on + strand at 187.495 kb on + strand at 187.519 kb on + strand at 187.523 kb on + strand at 187.523 kb on + strand at 187.524 kb on - strand at 187.668 kb on + strand, within LU632_RS00860 at 187.816 kb on + strand, within LU632_RS00860 at 187.817 kb on - strand, within LU632_RS00860 at 187.836 kb on + strand, within LU632_RS00860 at 187.836 kb on + strand, within LU632_RS00860 at 187.837 kb on - strand, within LU632_RS00860 at 187.837 kb on - strand, within LU632_RS00860 at 187.837 kb on - strand, within LU632_RS00860 at 187.840 kb on + strand, within LU632_RS00860 at 187.870 kb on + strand, within LU632_RS00860 at 187.871 kb on - strand, within LU632_RS00860 at 187.871 kb on - strand, within LU632_RS00860 at 187.910 kb on + strand, within LU632_RS00860 at 187.910 kb on + strand, within LU632_RS00860 at 187.910 kb on + strand, within LU632_RS00860 at 187.910 kb on + strand, within LU632_RS00860 at 187.918 kb on + strand, within LU632_RS00860 at 188.074 kb on + strand at 188.075 kb on - strand at 188.075 kb on - strand at 188.124 kb on - strand at 188.147 kb on + strand at 188.243 kb on - strand at 188.257 kb on - strand at 188.259 kb on + strand at 188.260 kb on - strand at 188.320 kb on + strand at 188.320 kb on + strand at 188.407 kb on + strand, within LU632_RS00865 at 188.408 kb on - strand, within LU632_RS00865 at 188.535 kb on + strand, within LU632_RS00865 at 188.535 kb on + strand, within LU632_RS00865 at 188.540 kb on - strand, within LU632_RS00865 at 188.557 kb on - strand, within LU632_RS00865 at 188.558 kb on + strand, within LU632_RS00865 at 188.559 kb on - strand, within LU632_RS00865 at 188.662 kb on + strand, within LU632_RS00865 at 188.662 kb on + strand, within LU632_RS00865 at 188.662 kb on + strand, within LU632_RS00865 at 188.662 kb on + strand, within LU632_RS00865 at 188.663 kb on - strand, within LU632_RS00865 at 188.663 kb on - strand, within LU632_RS00865 at 188.734 kb on + strand, within LU632_RS00865 at 188.735 kb on - strand, within LU632_RS00865 at 188.739 kb on - strand, within LU632_RS00865 at 188.762 kb on - strand, within LU632_RS00865 at 188.810 kb on - strand, within LU632_RS00865 at 188.825 kb on + strand, within LU632_RS00865 at 188.826 kb on - strand, within LU632_RS00865 at 188.906 kb on + strand, within LU632_RS00865 at 188.906 kb on + strand, within LU632_RS00865 at 188.906 kb on + strand, within LU632_RS00865 at 188.906 kb on + strand, within LU632_RS00865 at 188.911 kb on + strand, within LU632_RS00865 at 188.911 kb on + strand, within LU632_RS00865
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2) remove 186,667 + -0.7 186,668 - -3.4 186,674 + -0.1 186,729 - -1.0 186,790 + +1.3 186,825 - -0.1 186,840 + -2.1 186,841 - +1.8 186,917 + +0.2 186,924 + +3.3 186,925 - -1.5 186,925 - +1.4 186,953 + +0.3 186,961 + +0.1 187,003 + +0.3 187,007 + -1.0 187,007 + -0.7 187,019 + +2.4 187,251 - LU632_RS00855 0.62 -0.7 187,257 - LU632_RS00855 0.64 -0.3 187,316 + LU632_RS00855 0.82 -1.0 187,352 + +0.9 187,374 + +0.7 187,436 - -0.1 187,436 - -0.3 187,444 + -1.9 187,457 - +2.0 187,461 + +1.8 187,461 + +1.0 187,461 + +1.3 187,461 + -0.2 187,462 - -0.4 187,476 + -2.1 187,495 + +0.0 187,519 + +2.8 187,523 + -1.3 187,523 + -2.7 187,524 - +3.6 187,668 + LU632_RS00860 0.34 -1.9 187,816 + LU632_RS00860 0.63 -3.3 187,817 - LU632_RS00860 0.63 +2.4 187,836 + LU632_RS00860 0.67 +0.8 187,836 + LU632_RS00860 0.67 +0.3 187,837 - LU632_RS00860 0.67 -1.2 187,837 - LU632_RS00860 0.67 -0.9 187,837 - LU632_RS00860 0.67 +0.9 187,840 + LU632_RS00860 0.68 +1.9 187,870 + LU632_RS00860 0.74 -2.2 187,871 - LU632_RS00860 0.74 -0.1 187,871 - LU632_RS00860 0.74 -2.9 187,910 + LU632_RS00860 0.82 +0.0 187,910 + LU632_RS00860 0.82 -1.8 187,910 + LU632_RS00860 0.82 -3.0 187,910 + LU632_RS00860 0.82 -2.2 187,918 + LU632_RS00860 0.83 +0.6 188,074 + -1.1 188,075 - +1.3 188,075 - -0.5 188,124 - -0.5 188,147 + +1.5 188,243 - -0.1 188,257 - -3.3 188,259 + +3.2 188,260 - +0.5 188,320 + -0.7 188,320 + -3.1 188,407 + LU632_RS00865 0.19 -2.8 188,408 - LU632_RS00865 0.19 -2.1 188,535 + LU632_RS00865 0.32 +1.8 188,535 + LU632_RS00865 0.32 -1.9 188,540 - LU632_RS00865 0.33 -1.5 188,557 - LU632_RS00865 0.35 -0.2 188,558 + LU632_RS00865 0.35 -1.3 188,559 - LU632_RS00865 0.35 -1.8 188,662 + LU632_RS00865 0.46 +0.4 188,662 + LU632_RS00865 0.46 -2.0 188,662 + LU632_RS00865 0.46 +0.1 188,662 + LU632_RS00865 0.46 +2.6 188,663 - LU632_RS00865 0.46 -0.3 188,663 - LU632_RS00865 0.46 -1.2 188,734 + LU632_RS00865 0.54 -3.7 188,735 - LU632_RS00865 0.54 +0.5 188,739 - LU632_RS00865 0.55 -0.7 188,762 - LU632_RS00865 0.57 -0.1 188,810 - LU632_RS00865 0.62 +1.3 188,825 + LU632_RS00865 0.64 -1.7 188,826 - LU632_RS00865 0.64 +0.5 188,906 + LU632_RS00865 0.73 +1.1 188,906 + LU632_RS00865 0.73 +1.5 188,906 + LU632_RS00865 0.73 -2.2 188,906 + LU632_RS00865 0.73 +1.1 188,911 + LU632_RS00865 0.73 -1.7 188,911 + LU632_RS00865 0.73 +4.0
Or see this region's nucleotide sequence