Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00435

Experiment: Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 1 Petiole 2 (TE2-S-C1-P2)
88,556	-	sctJ	LU632_RS00425	0.50	+0.6
88,619	-	sctJ	LU632_RS00425	0.58	+0.3
88,711	-	sctJ	LU632_RS00425	0.70	-0.2
88,740	-	sctJ	LU632_RS00425	0.74	-0.3
88,759	+	sctJ	LU632_RS00425	0.76	+1.3
88,766	-	sctJ	LU632_RS00425	0.77	-1.9
88,804	+	sctJ	LU632_RS00425	0.82	-2.2
89,423	+	sctF	LU632_RS00435	0.38	-2.3
89,584	+				-2.1
89,669	+				-1.6
89,669	+				+1.7
89,669	+				-1.4
89,670	-				-2.7
89,851	+		LU632_RS00440	0.20	+1.9
89,911	-		LU632_RS00440	0.25	+1.7
89,914	+		LU632_RS00440	0.25	-0.5
90,144	+		LU632_RS00440	0.44	-1.1
90,209	-		LU632_RS00440	0.49	+2.1
90,314	-		LU632_RS00440	0.57	+2.7
90,314	-		LU632_RS00440	0.57	-1.1
90,372	+		LU632_RS00440	0.62	-1.6