Experiment: Pectin from apple; autoclaved 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS14025 and HMPREF1181_RS14030 are separated by 97 nucleotides HMPREF1181_RS14030 and HMPREF1181_RS14035 are separated by 150 nucleotides HMPREF1181_RS14035 and HMPREF1181_RS14040 are separated by 15 nucleotides
HMPREF1181_RS14025: HMPREF1181_RS14025 - acyl-CoA dehydrogenase family protein, at 325,963 to 327,669
_RS14025
HMPREF1181_RS14030: HMPREF1181_RS14030 - N-acetyltransferase, at 327,767 to 328,285
_RS14030
HMPREF1181_RS14035: HMPREF1181_RS14035 - chaperone modulator CbpM, at 328,436 to 328,732
_RS14035
HMPREF1181_RS14040: HMPREF1181_RS14040 - J domain-containing protein, at 328,748 to 329,725
_RS14040
Position (kb) 328
329 Strain fitness (log2 ratio) -2
-1
0
1 at 327.585 kb on - strand at 327.590 kb on - strand at 327.631 kb on - strand at 327.672 kb on + strand at 327.731 kb on + strand at 327.744 kb on - strand at 327.768 kb on + strand at 327.768 kb on + strand at 327.768 kb on + strand at 327.773 kb on - strand at 327.831 kb on + strand, within HMPREF1181_RS14030 at 327.859 kb on + strand, within HMPREF1181_RS14030 at 327.864 kb on + strand, within HMPREF1181_RS14030 at 327.880 kb on + strand, within HMPREF1181_RS14030 at 327.880 kb on + strand, within HMPREF1181_RS14030 at 327.880 kb on + strand, within HMPREF1181_RS14030 at 327.881 kb on - strand, within HMPREF1181_RS14030 at 327.900 kb on + strand, within HMPREF1181_RS14030 at 327.931 kb on + strand, within HMPREF1181_RS14030 at 327.931 kb on + strand, within HMPREF1181_RS14030 at 327.931 kb on + strand, within HMPREF1181_RS14030 at 327.994 kb on + strand, within HMPREF1181_RS14030 at 327.994 kb on + strand, within HMPREF1181_RS14030 at 328.030 kb on + strand, within HMPREF1181_RS14030 at 328.030 kb on + strand, within HMPREF1181_RS14030 at 328.030 kb on + strand, within HMPREF1181_RS14030 at 328.031 kb on - strand, within HMPREF1181_RS14030 at 328.036 kb on + strand, within HMPREF1181_RS14030 at 328.036 kb on + strand, within HMPREF1181_RS14030 at 328.037 kb on - strand, within HMPREF1181_RS14030 at 328.037 kb on - strand, within HMPREF1181_RS14030 at 328.041 kb on + strand, within HMPREF1181_RS14030 at 328.068 kb on + strand, within HMPREF1181_RS14030 at 328.069 kb on - strand, within HMPREF1181_RS14030 at 328.121 kb on + strand, within HMPREF1181_RS14030 at 328.122 kb on - strand, within HMPREF1181_RS14030 at 328.163 kb on + strand, within HMPREF1181_RS14030 at 328.170 kb on + strand, within HMPREF1181_RS14030 at 328.171 kb on - strand, within HMPREF1181_RS14030 at 328.230 kb on + strand, within HMPREF1181_RS14030 at 328.242 kb on + strand at 328.269 kb on - strand at 328.310 kb on - strand at 328.364 kb on - strand at 328.400 kb on - strand at 328.426 kb on - strand at 328.437 kb on + strand at 328.468 kb on + strand, within HMPREF1181_RS14035 at 328.469 kb on - strand, within HMPREF1181_RS14035 at 328.496 kb on - strand, within HMPREF1181_RS14035 at 328.563 kb on + strand, within HMPREF1181_RS14035 at 328.563 kb on + strand, within HMPREF1181_RS14035 at 328.568 kb on - strand, within HMPREF1181_RS14035 at 328.641 kb on - strand, within HMPREF1181_RS14035 at 328.641 kb on - strand, within HMPREF1181_RS14035 at 328.682 kb on + strand, within HMPREF1181_RS14035 at 328.683 kb on - strand, within HMPREF1181_RS14035 at 328.683 kb on - strand, within HMPREF1181_RS14035 at 328.718 kb on + strand at 328.732 kb on + strand at 328.757 kb on - strand at 328.821 kb on + strand at 328.821 kb on + strand at 329.008 kb on - strand, within HMPREF1181_RS14040 at 329.288 kb on - strand, within HMPREF1181_RS14040 at 329.367 kb on + strand, within HMPREF1181_RS14040 at 329.377 kb on + strand, within HMPREF1181_RS14040 at 329.378 kb on - strand, within HMPREF1181_RS14040 at 329.378 kb on - strand, within HMPREF1181_RS14040 at 329.529 kb on + strand, within HMPREF1181_RS14040 at 329.579 kb on - strand, within HMPREF1181_RS14040 at 329.603 kb on - strand, within HMPREF1181_RS14040 at 329.647 kb on + strand at 329.718 kb on + strand at 329.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; autoclaved 2.5 mg/mL (C) remove 327,585 - +0.3 327,590 - -0.6 327,631 - +0.9 327,672 + -0.5 327,731 + +0.0 327,744 - +0.3 327,768 + -0.9 327,768 + -0.6 327,768 + -0.7 327,773 - -1.9 327,831 + HMPREF1181_RS14030 0.12 -0.4 327,859 + HMPREF1181_RS14030 0.18 +0.9 327,864 + HMPREF1181_RS14030 0.19 -0.4 327,880 + HMPREF1181_RS14030 0.22 -1.2 327,880 + HMPREF1181_RS14030 0.22 -1.3 327,880 + HMPREF1181_RS14030 0.22 +0.2 327,881 - HMPREF1181_RS14030 0.22 +0.7 327,900 + HMPREF1181_RS14030 0.26 +0.1 327,931 + HMPREF1181_RS14030 0.32 -0.1 327,931 + HMPREF1181_RS14030 0.32 +0.8 327,931 + HMPREF1181_RS14030 0.32 +0.9 327,994 + HMPREF1181_RS14030 0.44 -1.4 327,994 + HMPREF1181_RS14030 0.44 +0.5 328,030 + HMPREF1181_RS14030 0.51 +0.2 328,030 + HMPREF1181_RS14030 0.51 +0.2 328,030 + HMPREF1181_RS14030 0.51 +0.2 328,031 - HMPREF1181_RS14030 0.51 -0.4 328,036 + HMPREF1181_RS14030 0.52 -0.5 328,036 + HMPREF1181_RS14030 0.52 +0.2 328,037 - HMPREF1181_RS14030 0.52 +1.2 328,037 - HMPREF1181_RS14030 0.52 +0.0 328,041 + HMPREF1181_RS14030 0.53 +0.9 328,068 + HMPREF1181_RS14030 0.58 +0.1 328,069 - HMPREF1181_RS14030 0.58 +1.6 328,121 + HMPREF1181_RS14030 0.68 +1.2 328,122 - HMPREF1181_RS14030 0.68 +0.1 328,163 + HMPREF1181_RS14030 0.76 +0.3 328,170 + HMPREF1181_RS14030 0.78 +1.2 328,171 - HMPREF1181_RS14030 0.78 -1.3 328,230 + HMPREF1181_RS14030 0.89 +0.2 328,242 + +0.6 328,269 - -0.7 328,310 - -0.5 328,364 - -0.7 328,400 - -0.1 328,426 - -1.2 328,437 + -0.1 328,468 + HMPREF1181_RS14035 0.11 -2.1 328,469 - HMPREF1181_RS14035 0.11 +1.2 328,496 - HMPREF1181_RS14035 0.20 +1.6 328,563 + HMPREF1181_RS14035 0.43 -0.1 328,563 + HMPREF1181_RS14035 0.43 +0.0 328,568 - HMPREF1181_RS14035 0.44 -0.2 328,641 - HMPREF1181_RS14035 0.69 -0.0 328,641 - HMPREF1181_RS14035 0.69 -0.6 328,682 + HMPREF1181_RS14035 0.83 -0.5 328,683 - HMPREF1181_RS14035 0.83 -0.6 328,683 - HMPREF1181_RS14035 0.83 +0.5 328,718 + -0.5 328,732 + +0.9 328,757 - +0.2 328,821 + +0.2 328,821 + -0.6 329,008 - HMPREF1181_RS14040 0.27 +0.4 329,288 - HMPREF1181_RS14040 0.55 -0.5 329,367 + HMPREF1181_RS14040 0.63 -0.4 329,377 + HMPREF1181_RS14040 0.64 +0.3 329,378 - HMPREF1181_RS14040 0.64 -0.8 329,378 - HMPREF1181_RS14040 0.64 +0.7 329,529 + HMPREF1181_RS14040 0.80 +0.2 329,579 - HMPREF1181_RS14040 0.85 -0.3 329,603 - HMPREF1181_RS14040 0.87 -0.4 329,647 + +0.7 329,718 + +1.1 329,731 - +0.4
Or see this region's nucleotide sequence