Experiment: Polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS14835 and HMPREF1181_RS14840 are separated by 79 nucleotides HMPREF1181_RS14840 and HMPREF1181_RS14845 overlap by 4 nucleotides HMPREF1181_RS14845 and HMPREF1181_RS14850 are separated by 11 nucleotides
HMPREF1181_RS14835: HMPREF1181_RS14835 - phosphatidylinositol-4-phosphate 5-kinase, at 150,841 to 151,998
_RS14835
HMPREF1181_RS14840: HMPREF1181_RS14840 - insulinase family protein, at 152,078 to 153,388
_RS14840
HMPREF1181_RS14845: HMPREF1181_RS14845 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 153,385 to 154,143
_RS14845
HMPREF1181_RS14850: HMPREF1181_RS14850 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 154,155 to 154,580
_RS14850
Position (kb) 152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 151.089 kb on - strand, within HMPREF1181_RS14835 at 151.089 kb on - strand, within HMPREF1181_RS14835 at 151.160 kb on - strand, within HMPREF1181_RS14835 at 151.179 kb on + strand, within HMPREF1181_RS14835 at 151.179 kb on + strand, within HMPREF1181_RS14835 at 151.180 kb on - strand, within HMPREF1181_RS14835 at 151.222 kb on + strand, within HMPREF1181_RS14835 at 151.251 kb on - strand, within HMPREF1181_RS14835 at 151.251 kb on - strand, within HMPREF1181_RS14835 at 151.251 kb on - strand, within HMPREF1181_RS14835 at 151.283 kb on + strand, within HMPREF1181_RS14835 at 151.283 kb on + strand, within HMPREF1181_RS14835 at 151.284 kb on - strand, within HMPREF1181_RS14835 at 151.320 kb on - strand, within HMPREF1181_RS14835 at 151.364 kb on + strand, within HMPREF1181_RS14835 at 151.365 kb on - strand, within HMPREF1181_RS14835 at 151.399 kb on - strand, within HMPREF1181_RS14835 at 151.434 kb on - strand, within HMPREF1181_RS14835 at 151.479 kb on + strand, within HMPREF1181_RS14835 at 151.526 kb on + strand, within HMPREF1181_RS14835 at 151.527 kb on - strand, within HMPREF1181_RS14835 at 151.572 kb on - strand, within HMPREF1181_RS14835 at 151.587 kb on - strand, within HMPREF1181_RS14835 at 151.592 kb on + strand, within HMPREF1181_RS14835 at 151.596 kb on + strand, within HMPREF1181_RS14835 at 151.596 kb on + strand, within HMPREF1181_RS14835 at 151.647 kb on + strand, within HMPREF1181_RS14835 at 151.648 kb on - strand, within HMPREF1181_RS14835 at 151.657 kb on - strand, within HMPREF1181_RS14835 at 151.661 kb on + strand, within HMPREF1181_RS14835 at 151.668 kb on + strand, within HMPREF1181_RS14835 at 151.733 kb on + strand, within HMPREF1181_RS14835 at 151.778 kb on + strand, within HMPREF1181_RS14835 at 151.849 kb on + strand, within HMPREF1181_RS14835 at 151.964 kb on + strand at 151.964 kb on + strand at 151.983 kb on + strand at 151.987 kb on + strand at 151.987 kb on + strand at 152.013 kb on + strand at 152.022 kb on - strand at 152.045 kb on - strand at 152.151 kb on - strand at 152.167 kb on + strand at 152.168 kb on - strand at 152.290 kb on + strand, within HMPREF1181_RS14840 at 152.348 kb on + strand, within HMPREF1181_RS14840 at 152.349 kb on - strand, within HMPREF1181_RS14840 at 152.456 kb on - strand, within HMPREF1181_RS14840 at 152.464 kb on + strand, within HMPREF1181_RS14840 at 152.464 kb on + strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.465 kb on - strand, within HMPREF1181_RS14840 at 152.713 kb on + strand, within HMPREF1181_RS14840 at 152.713 kb on + strand, within HMPREF1181_RS14840 at 152.714 kb on - strand, within HMPREF1181_RS14840 at 152.833 kb on - strand, within HMPREF1181_RS14840 at 152.877 kb on + strand, within HMPREF1181_RS14840 at 152.879 kb on + strand, within HMPREF1181_RS14840 at 152.879 kb on + strand, within HMPREF1181_RS14840 at 152.951 kb on - strand, within HMPREF1181_RS14840 at 152.951 kb on - strand, within HMPREF1181_RS14840 at 152.957 kb on + strand, within HMPREF1181_RS14840 at 152.962 kb on + strand, within HMPREF1181_RS14840 at 152.963 kb on - strand, within HMPREF1181_RS14840 at 153.063 kb on + strand, within HMPREF1181_RS14840 at 153.063 kb on + strand, within HMPREF1181_RS14840 at 153.070 kb on - strand, within HMPREF1181_RS14840 at 153.106 kb on - strand, within HMPREF1181_RS14840 at 153.108 kb on + strand, within HMPREF1181_RS14840 at 153.167 kb on - strand, within HMPREF1181_RS14840 at 153.234 kb on - strand, within HMPREF1181_RS14840 at 153.293 kb on - strand at 153.343 kb on + strand at 154.144 kb on - strand at 154.170 kb on - strand at 154.175 kb on - strand at 154.245 kb on - strand, within HMPREF1181_RS14850 at 154.245 kb on - strand, within HMPREF1181_RS14850 at 154.272 kb on - strand, within HMPREF1181_RS14850 at 154.274 kb on - strand, within HMPREF1181_RS14850 at 154.274 kb on - strand, within HMPREF1181_RS14850 at 154.303 kb on - strand, within HMPREF1181_RS14850 at 154.315 kb on - strand, within HMPREF1181_RS14850 at 154.315 kb on - strand, within HMPREF1181_RS14850 at 154.363 kb on - strand, within HMPREF1181_RS14850
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C) remove 151,089 - HMPREF1181_RS14835 0.21 -0.4 151,089 - HMPREF1181_RS14835 0.21 +1.1 151,160 - HMPREF1181_RS14835 0.28 -1.9 151,179 + HMPREF1181_RS14835 0.29 -0.9 151,179 + HMPREF1181_RS14835 0.29 -0.0 151,180 - HMPREF1181_RS14835 0.29 +0.4 151,222 + HMPREF1181_RS14835 0.33 -0.7 151,251 - HMPREF1181_RS14835 0.35 -0.2 151,251 - HMPREF1181_RS14835 0.35 +0.2 151,251 - HMPREF1181_RS14835 0.35 -1.5 151,283 + HMPREF1181_RS14835 0.38 -1.2 151,283 + HMPREF1181_RS14835 0.38 -1.0 151,284 - HMPREF1181_RS14835 0.38 -1.6 151,320 - HMPREF1181_RS14835 0.41 -2.6 151,364 + HMPREF1181_RS14835 0.45 -0.3 151,365 - HMPREF1181_RS14835 0.45 +0.5 151,399 - HMPREF1181_RS14835 0.48 -1.2 151,434 - HMPREF1181_RS14835 0.51 -1.5 151,479 + HMPREF1181_RS14835 0.55 -0.7 151,526 + HMPREF1181_RS14835 0.59 -1.6 151,527 - HMPREF1181_RS14835 0.59 -1.2 151,572 - HMPREF1181_RS14835 0.63 -0.9 151,587 - HMPREF1181_RS14835 0.64 -1.2 151,592 + HMPREF1181_RS14835 0.65 -0.4 151,596 + HMPREF1181_RS14835 0.65 -2.4 151,596 + HMPREF1181_RS14835 0.65 -1.0 151,647 + HMPREF1181_RS14835 0.70 -0.9 151,648 - HMPREF1181_RS14835 0.70 +0.3 151,657 - HMPREF1181_RS14835 0.70 -0.6 151,661 + HMPREF1181_RS14835 0.71 -0.0 151,668 + HMPREF1181_RS14835 0.71 +0.0 151,733 + HMPREF1181_RS14835 0.77 -2.8 151,778 + HMPREF1181_RS14835 0.81 -1.5 151,849 + HMPREF1181_RS14835 0.87 -1.5 151,964 + -1.5 151,964 + -1.2 151,983 + -1.7 151,987 + -1.4 151,987 + +0.6 152,013 + +0.6 152,022 - +0.8 152,045 - +0.2 152,151 - +0.4 152,167 + +1.6 152,168 - +0.5 152,290 + HMPREF1181_RS14840 0.16 -0.6 152,348 + HMPREF1181_RS14840 0.21 +0.0 152,349 - HMPREF1181_RS14840 0.21 +0.4 152,456 - HMPREF1181_RS14840 0.29 +0.1 152,464 + HMPREF1181_RS14840 0.29 +0.6 152,464 + HMPREF1181_RS14840 0.29 +0.5 152,465 - HMPREF1181_RS14840 0.30 +0.3 152,465 - HMPREF1181_RS14840 0.30 +0.2 152,465 - HMPREF1181_RS14840 0.30 +1.6 152,465 - HMPREF1181_RS14840 0.30 +1.2 152,465 - HMPREF1181_RS14840 0.30 +0.9 152,713 + HMPREF1181_RS14840 0.48 +0.6 152,713 + HMPREF1181_RS14840 0.48 -0.4 152,714 - HMPREF1181_RS14840 0.49 +0.2 152,833 - HMPREF1181_RS14840 0.58 +0.2 152,877 + HMPREF1181_RS14840 0.61 +0.3 152,879 + HMPREF1181_RS14840 0.61 -0.4 152,879 + HMPREF1181_RS14840 0.61 +0.2 152,951 - HMPREF1181_RS14840 0.67 +0.3 152,951 - HMPREF1181_RS14840 0.67 -0.3 152,957 + HMPREF1181_RS14840 0.67 +0.0 152,962 + HMPREF1181_RS14840 0.67 -0.1 152,963 - HMPREF1181_RS14840 0.68 -0.5 153,063 + HMPREF1181_RS14840 0.75 -0.5 153,063 + HMPREF1181_RS14840 0.75 +0.5 153,070 - HMPREF1181_RS14840 0.76 +1.6 153,106 - HMPREF1181_RS14840 0.78 +0.5 153,108 + HMPREF1181_RS14840 0.79 +0.6 153,167 - HMPREF1181_RS14840 0.83 -0.1 153,234 - HMPREF1181_RS14840 0.88 -0.3 153,293 - +0.2 153,343 + +0.4 154,144 - +0.3 154,170 - -0.3 154,175 - -0.4 154,245 - HMPREF1181_RS14850 0.21 -1.3 154,245 - HMPREF1181_RS14850 0.21 +0.4 154,272 - HMPREF1181_RS14850 0.27 -1.7 154,274 - HMPREF1181_RS14850 0.28 -1.0 154,274 - HMPREF1181_RS14850 0.28 -1.2 154,303 - HMPREF1181_RS14850 0.35 -0.4 154,315 - HMPREF1181_RS14850 0.38 +1.0 154,315 - HMPREF1181_RS14850 0.38 -1.0 154,363 - HMPREF1181_RS14850 0.49 -1.5
Or see this region's nucleotide sequence