Experiment: Polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS00925 and HMPREF1181_RS00930 are separated by 51 nucleotides HMPREF1181_RS00930 and HMPREF1181_RS00935 are separated by 32 nucleotides HMPREF1181_RS00935 and HMPREF1181_RS00940 are separated by 149 nucleotides HMPREF1181_RS00940 and HMPREF1181_RS00945 are separated by 41 nucleotides
HMPREF1181_RS00925: HMPREF1181_RS00925 - RNA polymerase factor sigma-54, at 211,666 to 213,156
_RS00925
HMPREF1181_RS00930: HMPREF1181_RS00930 - hypothetical protein, at 213,208 to 213,885
_RS00930
HMPREF1181_RS00935: HMPREF1181_RS00935 - glycine cleavage system protein GcvH, at 213,918 to 214,298
_RS00935
HMPREF1181_RS00940: HMPREF1181_RS00940 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 214,448 to 214,957
_RS00940
HMPREF1181_RS00945: HMPREF1181_RS00945 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 214,999 to 216,858
_RS00945
Position (kb) 213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 213.215 kb on + strand at 213.228 kb on + strand at 213.355 kb on + strand, within HMPREF1181_RS00930 at 213.355 kb on + strand, within HMPREF1181_RS00930 at 213.382 kb on + strand, within HMPREF1181_RS00930 at 213.399 kb on + strand, within HMPREF1181_RS00930 at 213.508 kb on + strand, within HMPREF1181_RS00930 at 213.508 kb on + strand, within HMPREF1181_RS00930 at 213.659 kb on + strand, within HMPREF1181_RS00930 at 213.659 kb on + strand, within HMPREF1181_RS00930 at 213.788 kb on + strand, within HMPREF1181_RS00930 at 213.883 kb on + strand at 213.883 kb on + strand at 213.910 kb on + strand at 213.937 kb on + strand at 213.937 kb on + strand at 213.982 kb on + strand, within HMPREF1181_RS00935 at 213.987 kb on + strand, within HMPREF1181_RS00935 at 214.028 kb on + strand, within HMPREF1181_RS00935 at 214.033 kb on + strand, within HMPREF1181_RS00935 at 214.324 kb on + strand at 214.337 kb on + strand at 214.621 kb on + strand, within HMPREF1181_RS00940 at 214.877 kb on + strand, within HMPREF1181_RS00940
Per-strain Table
Position Strand Gene LocusTag Fraction Polygalacturonic 2.5 mg/mL (C) remove 213,215 + -0.4 213,228 + +0.2 213,355 + HMPREF1181_RS00930 0.22 +0.3 213,355 + HMPREF1181_RS00930 0.22 -0.2 213,382 + HMPREF1181_RS00930 0.26 +1.7 213,399 + HMPREF1181_RS00930 0.28 +0.1 213,508 + HMPREF1181_RS00930 0.44 -0.2 213,508 + HMPREF1181_RS00930 0.44 -0.3 213,659 + HMPREF1181_RS00930 0.67 -0.0 213,659 + HMPREF1181_RS00930 0.67 +0.1 213,788 + HMPREF1181_RS00930 0.86 -0.2 213,883 + -0.1 213,883 + +0.3 213,910 + -0.0 213,937 + +0.9 213,937 + +0.3 213,982 + HMPREF1181_RS00935 0.17 +0.4 213,987 + HMPREF1181_RS00935 0.18 -0.1 214,028 + HMPREF1181_RS00935 0.29 +0.3 214,033 + HMPREF1181_RS00935 0.30 +0.7 214,324 + -0.4 214,337 + +0.2 214,621 + HMPREF1181_RS00940 0.34 -3.7 214,877 + HMPREF1181_RS00940 0.84 -3.2
Or see this region's nucleotide sequence