Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS08065

Experiment: Pectic galactan from potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS08060 and HMPREF1181_RS08065 are separated by 201 nucleotidesHMPREF1181_RS08065 and HMPREF1181_RS08070 are separated by 86 nucleotides HMPREF1181_RS08060: HMPREF1181_RS08060 - TonB-dependent receptor, at 121,876 to 125,004 _RS08060 HMPREF1181_RS08065: HMPREF1181_RS08065 - response regulator, at 125,206 to 125,607 _RS08065 HMPREF1181_RS08070: HMPREF1181_RS08070 - ABC-F family ATP-binding cassette domain-containing protein, at 125,694 to 127,328 _RS08070 Position (kb) 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 124.321 kb on - strand, within HMPREF1181_RS08060at 124.324 kb on + strand, within HMPREF1181_RS08060at 124.324 kb on + strand, within HMPREF1181_RS08060at 124.324 kb on + strand, within HMPREF1181_RS08060at 124.324 kb on + strand, within HMPREF1181_RS08060at 124.330 kb on - strand, within HMPREF1181_RS08060at 124.402 kb on + strand, within HMPREF1181_RS08060at 124.403 kb on - strand, within HMPREF1181_RS08060at 124.486 kb on - strand, within HMPREF1181_RS08060at 124.507 kb on + strand, within HMPREF1181_RS08060at 124.507 kb on + strand, within HMPREF1181_RS08060at 124.508 kb on - strand, within HMPREF1181_RS08060at 124.508 kb on - strand, within HMPREF1181_RS08060at 124.651 kb on - strand, within HMPREF1181_RS08060at 124.651 kb on - strand, within HMPREF1181_RS08060at 124.653 kb on - strand, within HMPREF1181_RS08060at 124.685 kb on - strand, within HMPREF1181_RS08060at 124.815 kb on + strandat 124.818 kb on - strandat 124.945 kb on + strandat 124.976 kb on - strandat 125.067 kb on - strandat 125.088 kb on - strandat 125.122 kb on - strandat 125.130 kb on + strandat 125.132 kb on + strandat 125.133 kb on - strandat 125.140 kb on + strandat 125.142 kb on + strandat 125.144 kb on + strandat 125.145 kb on - strandat 125.145 kb on - strandat 125.179 kb on + strandat 125.180 kb on - strandat 125.185 kb on + strandat 125.186 kb on - strandat 125.207 kb on + strandat 125.228 kb on + strandat 125.229 kb on - strandat 125.262 kb on + strand, within HMPREF1181_RS08065at 125.263 kb on - strand, within HMPREF1181_RS08065at 125.278 kb on + strand, within HMPREF1181_RS08065at 125.330 kb on + strand, within HMPREF1181_RS08065at 125.331 kb on - strand, within HMPREF1181_RS08065at 125.405 kb on - strand, within HMPREF1181_RS08065at 125.415 kb on + strand, within HMPREF1181_RS08065at 125.497 kb on + strand, within HMPREF1181_RS08065at 125.498 kb on - strand, within HMPREF1181_RS08065at 125.517 kb on + strand, within HMPREF1181_RS08065at 125.528 kb on - strand, within HMPREF1181_RS08065at 125.535 kb on + strand, within HMPREF1181_RS08065at 125.541 kb on + strand, within HMPREF1181_RS08065at 125.541 kb on + strand, within HMPREF1181_RS08065at 125.544 kb on + strand, within HMPREF1181_RS08065at 125.545 kb on - strand, within HMPREF1181_RS08065at 125.618 kb on - strandat 125.618 kb on - strandat 125.618 kb on - strandat 125.653 kb on + strandat 125.653 kb on + strandat 125.654 kb on - strandat 125.692 kb on + strandat 125.752 kb on + strandat 125.752 kb on + strandat 125.761 kb on + strandat 125.821 kb on + strandat 125.821 kb on + strandat 125.895 kb on + strand, within HMPREF1181_RS08070at 125.989 kb on + strand, within HMPREF1181_RS08070at 126.042 kb on + strand, within HMPREF1181_RS08070at 126.043 kb on - strand, within HMPREF1181_RS08070at 126.043 kb on - strand, within HMPREF1181_RS08070at 126.088 kb on - strand, within HMPREF1181_RS08070at 126.108 kb on + strand, within HMPREF1181_RS08070at 126.414 kb on + strand, within HMPREF1181_RS08070at 126.416 kb on + strand, within HMPREF1181_RS08070at 126.416 kb on + strand, within HMPREF1181_RS08070at 126.417 kb on - strand, within HMPREF1181_RS08070at 126.426 kb on + strand, within HMPREF1181_RS08070at 126.480 kb on + strand, within HMPREF1181_RS08070at 126.481 kb on - strand, within HMPREF1181_RS08070

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/mL (C)
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124,321 - HMPREF1181_RS08060 0.78 +1.9
124,324 + HMPREF1181_RS08060 0.78 +0.2
124,324 + HMPREF1181_RS08060 0.78 -0.8
124,324 + HMPREF1181_RS08060 0.78 -0.4
124,324 + HMPREF1181_RS08060 0.78 -0.3
124,330 - HMPREF1181_RS08060 0.78 +0.3
124,402 + HMPREF1181_RS08060 0.81 +0.9
124,403 - HMPREF1181_RS08060 0.81 +0.7
124,486 - HMPREF1181_RS08060 0.83 +0.8
124,507 + HMPREF1181_RS08060 0.84 -1.1
124,507 + HMPREF1181_RS08060 0.84 -2.1
124,508 - HMPREF1181_RS08060 0.84 +0.2
124,508 - HMPREF1181_RS08060 0.84 -0.8
124,651 - HMPREF1181_RS08060 0.89 +0.6
124,651 - HMPREF1181_RS08060 0.89 +0.3
124,653 - HMPREF1181_RS08060 0.89 -1.5
124,685 - HMPREF1181_RS08060 0.90 +0.5
124,815 + -0.7
124,818 - +0.9
124,945 + -0.8
124,976 - +0.3
125,067 - -0.5
125,088 - +0.4
125,122 - +0.6
125,130 + -0.1
125,132 + -1.4
125,133 - +0.7
125,140 + -0.3
125,142 + +0.3
125,144 + +0.7
125,145 - +0.1
125,145 - -1.0
125,179 + +0.5
125,180 - +0.7
125,185 + -1.2
125,186 - -1.2
125,207 + +1.0
125,228 + -0.9
125,229 - +0.0
125,262 + HMPREF1181_RS08065 0.14 +0.6
125,263 - HMPREF1181_RS08065 0.14 +1.1
125,278 + HMPREF1181_RS08065 0.18 -0.5
125,330 + HMPREF1181_RS08065 0.31 +0.5
125,331 - HMPREF1181_RS08065 0.31 +0.8
125,405 - HMPREF1181_RS08065 0.50 -1.0
125,415 + HMPREF1181_RS08065 0.52 +1.1
125,497 + HMPREF1181_RS08065 0.72 -1.0
125,498 - HMPREF1181_RS08065 0.73 +0.4
125,517 + HMPREF1181_RS08065 0.77 +0.5
125,528 - HMPREF1181_RS08065 0.80 -1.3
125,535 + HMPREF1181_RS08065 0.82 -1.0
125,541 + HMPREF1181_RS08065 0.83 +0.7
125,541 + HMPREF1181_RS08065 0.83 +0.7
125,544 + HMPREF1181_RS08065 0.84 -3.2
125,545 - HMPREF1181_RS08065 0.84 +0.6
125,618 - -0.4
125,618 - +1.1
125,618 - +0.6
125,653 + +0.4
125,653 + +0.1
125,654 - +0.1
125,692 + +0.6
125,752 + +0.1
125,752 + -0.2
125,761 + +0.1
125,821 + -2.2
125,821 + -1.8
125,895 + HMPREF1181_RS08070 0.12 +0.5
125,989 + HMPREF1181_RS08070 0.18 -1.7
126,042 + HMPREF1181_RS08070 0.21 +1.2
126,043 - HMPREF1181_RS08070 0.21 +0.5
126,043 - HMPREF1181_RS08070 0.21 -1.9
126,088 - HMPREF1181_RS08070 0.24 +0.5
126,108 + HMPREF1181_RS08070 0.25 -0.9
126,414 + HMPREF1181_RS08070 0.44 -0.7
126,416 + HMPREF1181_RS08070 0.44 +0.1
126,416 + HMPREF1181_RS08070 0.44 -0.7
126,417 - HMPREF1181_RS08070 0.44 -0.6
126,426 + HMPREF1181_RS08070 0.45 +0.1
126,480 + HMPREF1181_RS08070 0.48 +1.0
126,481 - HMPREF1181_RS08070 0.48 -0.7

Or see this region's nucleotide sequence