Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25285

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
4,807,623	+		LU632_RS25275	0.43	-1.6
4,807,623	+		LU632_RS25275	0.43	+1.1
4,807,623	+		LU632_RS25275	0.43	+0.2
4,807,623	+		LU632_RS25275	0.43	+0.2
4,807,624	-		LU632_RS25275	0.44	-1.2
4,807,631	-		LU632_RS25275	0.44	+1.2
4,807,631	-		LU632_RS25275	0.44	+0.2
4,807,828	+		LU632_RS25275	0.70	+0.6
4,807,922	+		LU632_RS25275	0.82	-0.1
4,808,039	-				+1.8
4,808,039	-				+0.5
4,808,039	-				-1.3
4,808,039	-				+2.0
4,808,081	-				-1.1
4,808,081	-				+0.9
4,808,103	+				-0.2
4,808,104	-				-0.8
4,808,104	-				-0.2
4,808,104	-				+1.4
4,808,107	+				-2.7
4,808,107	+				-1.1
4,808,107	+				-3.1
4,808,107	+				+2.2
4,808,298	+	gspS	LU632_RS25280	0.37	-0.9
4,808,421	-	gspS	LU632_RS25280	0.78	-2.2
4,808,421	-	gspS	LU632_RS25280	0.78	+0.7
4,808,421	-	gspS	LU632_RS25280	0.78	+0.2
4,808,421	-	gspS	LU632_RS25280	0.78	+0.9
4,808,443	-	gspS	LU632_RS25280	0.85	+0.8
4,808,540	+		LU632_RS25285	0.17	-0.1
4,808,540	+		LU632_RS25285	0.17	-0.3
4,808,608	-		LU632_RS25285	0.44	+0.7
4,808,608	-		LU632_RS25285	0.44	-0.3
4,808,744	-				-0.3
4,808,746	+				+0.2
4,808,746	+				-0.8
4,808,747	-				-0.7
4,808,750	-				+1.2
4,808,767	+				+0.5
4,808,767	+				-0.3
4,808,768	-				+0.2
4,808,775	+				+1.2
4,808,776	-				-0.9
4,808,808	+				+0.2
4,808,808	+				-2.1
4,808,812	+				-3.6
4,808,812	+				+2.0
4,808,813	-				+0.5
4,808,813	-				-1.5
4,808,875	-				+1.3
4,808,875	-				-0.3
4,808,879	+				-1.9
4,808,879	+				-1.1
4,808,879	+				-1.8
4,808,880	-				+2.4
4,808,882	-				+0.2
4,808,882	-				-2.7
4,808,888	+				+0.2
4,808,888	+				-1.5
4,809,041	-		LU632_RS25290	0.21	+2.0
4,809,063	+		LU632_RS25290	0.25	+1.2
4,809,096	-		LU632_RS25290	0.32	-0.0
4,809,120	+		LU632_RS25290	0.36	-1.6
4,809,120	+		LU632_RS25290	0.36	+0.2
4,809,121	-		LU632_RS25290	0.36	-0.5
4,809,224	+		LU632_RS25290	0.56	+0.8
4,809,224	+		LU632_RS25290	0.56	-0.1
4,809,225	-		LU632_RS25290	0.56	+2.2
4,809,327	+		LU632_RS25290	0.76	+0.1
4,809,327	-		LU632_RS25290	0.76	+0.5
4,809,386	-		LU632_RS25290	0.87	-1.6
4,809,386	-		LU632_RS25290	0.87	-0.8
4,809,389	-		LU632_RS25290	0.88	+0.8
4,809,412	-				-1.3
4,809,414	-				+1.0
4,809,414	-				+0.2
4,809,414	-				-0.9
4,809,488	+				+0.9
4,809,545	+				+0.8
4,809,548	+				+1.0
4,809,674	-				-1.3
4,809,674	-				+1.3
4,809,744	-				-0.6