Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24385

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
4,649,149	+				+1.1
4,649,203	-				-0.2
4,649,363	-	tnpA	LU632_RS24380	0.60	+2.0
4,649,363	-	tnpA	LU632_RS24380	0.60	-0.8
4,649,375	-	tnpA	LU632_RS24380	0.64	+0.9
4,649,430	+	tnpA	LU632_RS24380	0.81	-0.3
4,649,440	+	tnpA	LU632_RS24380	0.85	+1.3
4,649,450	+	tnpA	LU632_RS24380	0.88	-1.1
4,649,451	-	tnpA	LU632_RS24380	0.88	-0.1
4,649,451	-	tnpA	LU632_RS24380	0.88	-4.2
4,649,451	-	tnpA	LU632_RS24380	0.88	+0.6
4,649,453	-	tnpA	LU632_RS24380	0.89	-2.3
4,649,453	-	tnpA	LU632_RS24380	0.89	-1.1
4,649,453	-	tnpA	LU632_RS24380	0.89	+0.0
4,649,455	-	tnpA	LU632_RS24380	0.90	-0.7
4,649,455	-	tnpA	LU632_RS24380	0.90	+0.1
4,649,455	-	tnpA	LU632_RS24380	0.90	+0.4
4,649,683	+				-0.2
4,649,683	+				+3.2
4,649,703	+				+1.2
4,649,703	+				+0.6
4,649,703	+				+0.8
4,649,704	-				-2.3
4,649,704	-				-0.7
4,649,881	-	ilvC	LU632_RS24385	0.15	-0.7
4,649,925	+	ilvC	LU632_RS24385	0.18	-1.1
4,649,944	+	ilvC	LU632_RS24385	0.19	-3.5
4,649,945	-	ilvC	LU632_RS24385	0.19	-2.5
4,650,172	+	ilvC	LU632_RS24385	0.34	+0.4
4,650,223	+	ilvC	LU632_RS24385	0.38	-1.2
4,650,223	+	ilvC	LU632_RS24385	0.38	-0.8
4,650,224	-	ilvC	LU632_RS24385	0.38	+2.2
4,650,224	-	ilvC	LU632_RS24385	0.38	-0.6
4,650,464	-	ilvC	LU632_RS24385	0.54	-2.0
4,650,584	-	ilvC	LU632_RS24385	0.62	-0.7
4,650,595	+	ilvC	LU632_RS24385	0.63	-2.5
4,650,596	-	ilvC	LU632_RS24385	0.63	-2.8
4,650,713	-	ilvC	LU632_RS24385	0.71	+0.6
4,650,792	-	ilvC	LU632_RS24385	0.76	-2.0
4,650,980	-	ilvC	LU632_RS24385	0.89	+0.2
4,651,091	-				-1.9
4,651,091	-				-3.0
4,651,104	-				-0.8
4,651,134	+				-0.0
4,651,157	+				-4.5
4,651,157	+				+0.2
4,651,157	+				-1.4
4,651,158	-				+2.2
4,651,225	+				+4.9
4,651,240	-				-0.6
4,651,254	+				+0.2
4,651,256	+				-1.8
4,651,257	-				+0.5
4,651,259	+				-3.3
4,651,291	-				-3.1
4,651,326	+				-0.3
4,651,327	-				-1.3
4,651,450	-	ilvY	LU632_RS24390	0.16	+0.5
4,651,450	-	ilvY	LU632_RS24390	0.16	+1.2
4,651,453	+	ilvY	LU632_RS24390	0.16	+0.6
4,651,453	+	ilvY	LU632_RS24390	0.16	-1.9
4,651,542	+	ilvY	LU632_RS24390	0.26	+1.2
4,651,542	+	ilvY	LU632_RS24390	0.26	+0.1
4,651,543	-	ilvY	LU632_RS24390	0.26	+0.9
4,651,616	+	ilvY	LU632_RS24390	0.35	-3.2
4,651,626	+	ilvY	LU632_RS24390	0.36	-0.3
4,651,680	+	ilvY	LU632_RS24390	0.42	-3.3
4,651,827	+	ilvY	LU632_RS24390	0.59	+0.5
4,651,844	-	ilvY	LU632_RS24390	0.61	+0.6
4,651,844	-	ilvY	LU632_RS24390	0.61	-0.0
4,652,080	+	ilvY	LU632_RS24390	0.87	-1.4