Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23595

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
4,499,736	-		LU632_RS23590	0.25	-0.8
4,499,736	-		LU632_RS23590	0.25	+2.4
4,499,736	-		LU632_RS23590	0.25	+1.0
4,499,736	-		LU632_RS23590	0.25	-0.3
4,499,738	-		LU632_RS23590	0.25	+1.5
4,499,738	-		LU632_RS23590	0.25	-0.8
4,499,738	-		LU632_RS23590	0.25	-1.3
4,499,738	-		LU632_RS23590	0.25	+2.8
4,499,876	+		LU632_RS23590	0.40	+0.5
4,499,877	-		LU632_RS23590	0.40	-1.6
4,500,055	-		LU632_RS23590	0.60	-1.2
4,500,055	-		LU632_RS23590	0.60	+1.9
4,500,055	-		LU632_RS23590	0.60	+1.6
4,500,055	-		LU632_RS23590	0.60	+0.6
4,500,288	+		LU632_RS23590	0.85	+0.2
4,500,339	-				-0.8
4,500,523	-				-0.8
4,500,542	+				-0.3
4,500,543	-				-0.1
4,500,639	+				-0.2
4,500,639	+				+1.7
4,500,697	+				-0.6
4,500,743	+				-1.6
4,500,746	-				-1.5
4,500,830	-		LU632_RS23595	0.12	+0.9
4,500,869	+		LU632_RS23595	0.15	+1.5
4,500,870	-		LU632_RS23595	0.15	+1.2
4,500,870	-		LU632_RS23595	0.15	-2.8
4,500,929	-		LU632_RS23595	0.20	-0.1
4,500,929	-		LU632_RS23595	0.20	+1.2
4,500,959	+		LU632_RS23595	0.22	-0.2
4,500,959	+		LU632_RS23595	0.22	+2.2
4,500,959	+		LU632_RS23595	0.22	-0.2
4,500,959	+		LU632_RS23595	0.22	-1.2
4,500,959	+		LU632_RS23595	0.22	-0.2
4,500,960	-		LU632_RS23595	0.22	-0.2
4,500,960	-		LU632_RS23595	0.22	+1.6
4,500,960	-		LU632_RS23595	0.22	-0.8
4,500,960	-		LU632_RS23595	0.22	+0.0
4,500,960	-		LU632_RS23595	0.22	-2.5
4,500,962	-		LU632_RS23595	0.23	+1.7
4,501,022	-		LU632_RS23595	0.28	-1.3
4,501,108	-		LU632_RS23595	0.35	-2.0
4,501,161	+		LU632_RS23595	0.39	-0.1
4,501,175	+		LU632_RS23595	0.40	+0.7
4,501,432	+		LU632_RS23595	0.61	+1.8
4,501,433	-		LU632_RS23595	0.61	+0.2
4,501,496	+		LU632_RS23595	0.66	+1.4
4,501,496	+		LU632_RS23595	0.66	-0.3
4,501,497	-		LU632_RS23595	0.66	+1.0
4,501,497	-		LU632_RS23595	0.66	+1.2
4,501,595	+		LU632_RS23595	0.74	-1.3
4,501,597	+		LU632_RS23595	0.75	+0.7
4,501,597	+		LU632_RS23595	0.75	-1.3
4,501,597	+		LU632_RS23595	0.75	+0.2
4,501,635	-		LU632_RS23595	0.78	-0.3
4,501,637	+		LU632_RS23595	0.78	+0.6
4,501,638	-		LU632_RS23595	0.78	+0.4
4,501,638	-		LU632_RS23595	0.78	+0.7
4,501,698	+		LU632_RS23595	0.83	-1.9
4,501,698	+		LU632_RS23595	0.83	-1.9
4,501,699	-		LU632_RS23595	0.83	-2.5
4,501,699	-		LU632_RS23595	0.83	+1.7
4,501,771	+		LU632_RS23595	0.89	-1.9
4,501,771	+		LU632_RS23595	0.89	-0.4
4,501,909	+				-0.3
4,501,981	+				-1.0
4,501,984	+				+0.4
4,501,984	+				+0.4
4,501,984	+				+0.2
4,501,985	-				+2.1
4,501,985	-				-1.1
4,501,985	-				+0.8
4,501,991	+				-0.3
4,502,060	-				+1.1
4,502,084	+				-2.4
4,502,085	-				+0.4
4,502,139	-		LU632_RS23600	0.11	+1.3
4,502,148	-		LU632_RS23600	0.12	-0.5
4,502,202	+		LU632_RS23600	0.15	+1.7
4,502,203	-		LU632_RS23600	0.15	-0.4
4,502,236	+		LU632_RS23600	0.17	+0.2
4,502,236	+		LU632_RS23600	0.17	+1.8
4,502,251	+		LU632_RS23600	0.17	+1.7
4,502,306	+		LU632_RS23600	0.20	+0.9
4,502,306	+		LU632_RS23600	0.20	-1.8
4,502,306	+		LU632_RS23600	0.20	-0.3
4,502,306	+		LU632_RS23600	0.20	-0.9
4,502,306	+		LU632_RS23600	0.20	+1.2
4,502,307	-		LU632_RS23600	0.20	-0.2
4,502,307	-		LU632_RS23600	0.20	+2.3
4,502,307	-		LU632_RS23600	0.20	-0.8
4,502,307	-		LU632_RS23600	0.20	-0.3
4,502,307	-		LU632_RS23600	0.20	-2.1
4,502,307	-		LU632_RS23600	0.20	-2.2
4,502,307	-		LU632_RS23600	0.20	+0.0
4,502,308	+		LU632_RS23600	0.20	-0.3
4,502,308	+		LU632_RS23600	0.20	+0.5
4,502,308	+		LU632_RS23600	0.20	-0.4
4,502,309	-		LU632_RS23600	0.21	+0.1
4,502,309	-		LU632_RS23600	0.21	-0.1
4,502,363	+		LU632_RS23600	0.23	-2.3
4,502,363	+		LU632_RS23600	0.23	+0.1
4,502,364	-		LU632_RS23600	0.23	+2.1
4,502,364	-		LU632_RS23600	0.23	-2.6
4,502,364	-		LU632_RS23600	0.23	-0.5
4,502,364	-		LU632_RS23600	0.23	+1.7
4,502,368	+		LU632_RS23600	0.24	-1.8
4,502,414	+		LU632_RS23600	0.26	-0.0
4,502,415	-		LU632_RS23600	0.26	-0.7
4,502,433	+		LU632_RS23600	0.27	-1.0
4,502,433	+		LU632_RS23600	0.27	-1.6
4,502,433	+		LU632_RS23600	0.27	-0.2
4,502,434	-		LU632_RS23600	0.27	-1.6
4,502,522	+		LU632_RS23600	0.32	+0.3
4,502,523	-		LU632_RS23600	0.32	+0.4
4,502,563	+		LU632_RS23600	0.34	-1.1
4,502,622	-		LU632_RS23600	0.37	-2.6
4,502,657	+		LU632_RS23600	0.39	+1.6
4,502,664	+		LU632_RS23600	0.40	-0.3
4,502,664	+		LU632_RS23600	0.40	-0.6
4,502,684	-		LU632_RS23600	0.41	-1.7
4,502,693	+		LU632_RS23600	0.41	-1.3
4,502,699	+		LU632_RS23600	0.41	+0.7
4,502,702	+		LU632_RS23600	0.42	-1.2
4,502,702	+		LU632_RS23600	0.42	+0.4
4,502,797	+		LU632_RS23600	0.47	-0.0
4,502,803	-		LU632_RS23600	0.47	+1.4
4,502,836	+		LU632_RS23600	0.49	+2.5
4,502,836	+		LU632_RS23600	0.49	-0.1
4,502,837	-		LU632_RS23600	0.49	-3.1
4,502,837	-		LU632_RS23600	0.49	+0.2
4,502,887	+		LU632_RS23600	0.51	-0.6
4,502,896	-		LU632_RS23600	0.52	-2.2
4,502,898	-		LU632_RS23600	0.52	+2.2
4,502,898	-		LU632_RS23600	0.52	+0.2