Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23185 and LU632_RS23190 are separated by 431 nucleotides LU632_RS23190 and LU632_RS23195 are separated by 155 nucleotides LU632_RS23195 and LU632_RS23200 are separated by 95 nucleotides LU632_RS23200 and LU632_RS23205 overlap by 8 nucleotides
LU632_RS23185: LU632_RS23185 - IS481 family transposase, at 4,417,999 to 4,419,039
_RS23185
LU632_RS23190: LU632_RS23190 - IS6 family transposase, at 4,419,471 to 4,420,118
_RS23190
LU632_RS23195: LU632_RS23195 - amidohydrolase, at 4,420,274 to 4,420,471
_RS23195
LU632_RS23200: LU632_RS23200 - hypothetical protein, at 4,420,567 to 4,421,055
_RS23200
LU632_RS23205: LU632_RS23205 - alpha/beta hydrolase, at 4,421,048 to 4,421,200
_RS23205
Position (kb) 4419
4420
4421 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4419.305 kb on + strand at 4419.312 kb on + strand at 4419.312 kb on + strand at 4419.326 kb on - strand at 4419.397 kb on + strand at 4419.397 kb on + strand at 4419.397 kb on + strand at 4419.672 kb on + strand, within LU632_RS23190 at 4419.673 kb on - strand, within LU632_RS23190 at 4419.673 kb on - strand, within LU632_RS23190 at 4419.698 kb on - strand, within LU632_RS23190 at 4419.848 kb on + strand, within LU632_RS23190 at 4419.919 kb on - strand, within LU632_RS23190 at 4419.923 kb on + strand, within LU632_RS23190 at 4420.057 kb on - strand at 4420.128 kb on - strand at 4420.258 kb on - strand at 4420.273 kb on + strand at 4420.416 kb on + strand, within LU632_RS23195 at 4420.488 kb on - strand at 4420.531 kb on + strand at 4420.629 kb on + strand, within LU632_RS23200 at 4420.630 kb on - strand, within LU632_RS23200 at 4420.660 kb on + strand, within LU632_RS23200 at 4420.820 kb on + strand, within LU632_RS23200 at 4420.951 kb on + strand, within LU632_RS23200 at 4420.951 kb on + strand, within LU632_RS23200 at 4421.027 kb on - strand at 4421.073 kb on + strand, within LU632_RS23205 at 4421.073 kb on + strand, within LU632_RS23205 at 4421.074 kb on - strand, within LU632_RS23205 at 4421.079 kb on - strand, within LU632_RS23205 at 4421.079 kb on - strand, within LU632_RS23205 at 4421.079 kb on - strand, within LU632_RS23205
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 4,419,305 + +1.1 4,419,312 + -1.2 4,419,312 + -0.7 4,419,326 - -0.0 4,419,397 + +1.3 4,419,397 + -0.4 4,419,397 + +1.3 4,419,672 + LU632_RS23190 0.31 -1.3 4,419,673 - LU632_RS23190 0.31 +2.2 4,419,673 - LU632_RS23190 0.31 -0.5 4,419,698 - LU632_RS23190 0.35 -1.1 4,419,848 + LU632_RS23190 0.58 -1.3 4,419,919 - LU632_RS23190 0.69 +0.8 4,419,923 + LU632_RS23190 0.70 -0.8 4,420,057 - +1.1 4,420,128 - -0.6 4,420,258 - -0.2 4,420,273 + -4.0 4,420,416 + LU632_RS23195 0.72 +0.4 4,420,488 - -1.7 4,420,531 + -0.2 4,420,629 + LU632_RS23200 0.13 +0.1 4,420,630 - LU632_RS23200 0.13 +0.9 4,420,660 + LU632_RS23200 0.19 +1.8 4,420,820 + LU632_RS23200 0.52 +0.2 4,420,951 + LU632_RS23200 0.79 +0.2 4,420,951 + LU632_RS23200 0.79 -0.4 4,421,027 - -2.3 4,421,073 + LU632_RS23205 0.16 -0.5 4,421,073 + LU632_RS23205 0.16 -0.2 4,421,074 - LU632_RS23205 0.17 -2.4 4,421,079 - LU632_RS23205 0.20 +0.3 4,421,079 - LU632_RS23205 0.20 -2.2 4,421,079 - LU632_RS23205 0.20 -2.1
Or see this region's nucleotide sequence