Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trpS and LU632_RS22845 overlap by 4 nucleotides LU632_RS22845 and rpe overlap by 17 nucleotides rpe and dam are separated by 53 nucleotides
LU632_RS22840: trpS - tryptophan--tRNA ligase, at 4,348,846 to 4,349,850
trpS
LU632_RS22845: LU632_RS22845 - phosphoglycolate phosphatase, at 4,349,847 to 4,350,545
_RS22845
LU632_RS22850: rpe - ribulose-phosphate 3-epimerase, at 4,350,529 to 4,351,215
rpe
LU632_RS22855: dam - adenine-specific DNA-methyltransferase, at 4,351,269 to 4,352,090
dam
Position (kb) 4350
4351
4352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4349.911 kb on - strand at 4349.948 kb on - strand, within LU632_RS22845 at 4349.948 kb on - strand, within LU632_RS22845 at 4349.960 kb on - strand, within LU632_RS22845 at 4349.960 kb on - strand, within LU632_RS22845 at 4350.031 kb on - strand, within LU632_RS22845 at 4350.031 kb on - strand, within LU632_RS22845 at 4350.146 kb on + strand, within LU632_RS22845 at 4350.146 kb on + strand, within LU632_RS22845 at 4350.172 kb on - strand, within LU632_RS22845 at 4350.173 kb on + strand, within LU632_RS22845 at 4350.173 kb on + strand, within LU632_RS22845 at 4350.173 kb on + strand, within LU632_RS22845 at 4350.308 kb on + strand, within LU632_RS22845 at 4350.308 kb on + strand, within LU632_RS22845 at 4350.308 kb on + strand, within LU632_RS22845 at 4350.309 kb on - strand, within LU632_RS22845 at 4350.309 kb on - strand, within LU632_RS22845 at 4350.309 kb on - strand, within LU632_RS22845 at 4350.342 kb on - strand, within LU632_RS22845 at 4350.378 kb on - strand, within LU632_RS22845 at 4350.432 kb on + strand, within LU632_RS22845 at 4350.438 kb on + strand, within LU632_RS22845 at 4350.438 kb on + strand, within LU632_RS22845 at 4350.438 kb on + strand, within LU632_RS22845 at 4350.438 kb on + strand, within LU632_RS22845 at 4350.439 kb on - strand, within LU632_RS22845 at 4350.439 kb on - strand, within LU632_RS22845 at 4350.460 kb on - strand, within LU632_RS22845 at 4350.460 kb on - strand, within LU632_RS22845 at 4350.812 kb on - strand, within rpe at 4350.883 kb on - strand, within rpe at 4351.092 kb on - strand, within rpe at 4352.105 kb on - strand at 4352.105 kb on - strand at 4352.112 kb on - strand at 4352.112 kb on - strand at 4352.112 kb on - strand at 4352.143 kb on - strand at 4352.143 kb on - strand at 4352.143 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 4,349,911 - +1.5 4,349,948 - LU632_RS22845 0.14 -1.0 4,349,948 - LU632_RS22845 0.14 +1.5 4,349,960 - LU632_RS22845 0.16 +0.3 4,349,960 - LU632_RS22845 0.16 +0.2 4,350,031 - LU632_RS22845 0.26 -2.1 4,350,031 - LU632_RS22845 0.26 -0.4 4,350,146 + LU632_RS22845 0.43 +0.5 4,350,146 + LU632_RS22845 0.43 -2.0 4,350,172 - LU632_RS22845 0.46 +0.9 4,350,173 + LU632_RS22845 0.47 -1.6 4,350,173 + LU632_RS22845 0.47 +1.6 4,350,173 + LU632_RS22845 0.47 -1.9 4,350,308 + LU632_RS22845 0.66 -2.6 4,350,308 + LU632_RS22845 0.66 -0.4 4,350,308 + LU632_RS22845 0.66 +0.2 4,350,309 - LU632_RS22845 0.66 -1.0 4,350,309 - LU632_RS22845 0.66 +1.3 4,350,309 - LU632_RS22845 0.66 -1.5 4,350,342 - LU632_RS22845 0.71 -2.7 4,350,378 - LU632_RS22845 0.76 +3.4 4,350,432 + LU632_RS22845 0.84 -2.3 4,350,438 + LU632_RS22845 0.85 -2.8 4,350,438 + LU632_RS22845 0.85 -3.2 4,350,438 + LU632_RS22845 0.85 -1.6 4,350,438 + LU632_RS22845 0.85 -0.6 4,350,439 - LU632_RS22845 0.85 -0.8 4,350,439 - LU632_RS22845 0.85 +0.5 4,350,460 - LU632_RS22845 0.88 +1.2 4,350,460 - LU632_RS22845 0.88 -0.6 4,350,812 - rpe LU632_RS22850 0.41 +1.2 4,350,883 - rpe LU632_RS22850 0.52 +0.2 4,351,092 - rpe LU632_RS22850 0.82 -0.8 4,352,105 - -0.6 4,352,105 - +0.0 4,352,112 - -0.8 4,352,112 - -0.1 4,352,112 - +0.8 4,352,143 - +0.3 4,352,143 - -1.4 4,352,143 - -2.5
Or see this region's nucleotide sequence