Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ubiC and psiE are separated by 141 nucleotides psiE and LU632_RS22345 are separated by 153 nucleotides LU632_RS22345 and LU632_RS22350 overlap by 1 nucleotides LU632_RS22350 and LU632_RS22355 overlap by 4 nucleotides
LU632_RS22335: ubiC - chorismate lyase, at 4,265,508 to 4,266,035
ubiC
LU632_RS22340: psiE - phosphate-starvation-inducible protein PsiE, at 4,266,177 to 4,266,575
psiE
LU632_RS22345: LU632_RS22345 - YjbH domain-containing protein, at 4,266,729 to 4,268,825
_RS22345
LU632_RS22350: LU632_RS22350 - capsule biosynthesis GfcC family protein, at 4,268,825 to 4,269,580
_RS22350
LU632_RS22355: LU632_RS22355 - YjbF family lipoprotein, at 4,269,577 to 4,270,224
_RS22355
Position (kb) 4266
4267
4268
4269 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4265.757 kb on - strand, within ubiC at 4265.797 kb on - strand, within ubiC at 4265.797 kb on - strand, within ubiC at 4265.797 kb on - strand, within ubiC at 4266.010 kb on - strand at 4266.071 kb on + strand at 4266.160 kb on - strand at 4266.178 kb on + strand at 4266.178 kb on + strand at 4266.218 kb on + strand, within psiE at 4266.377 kb on + strand, within psiE at 4266.414 kb on + strand, within psiE at 4266.424 kb on + strand, within psiE at 4266.424 kb on + strand, within psiE at 4266.450 kb on - strand, within psiE at 4266.453 kb on + strand, within psiE at 4266.454 kb on - strand, within psiE at 4266.464 kb on - strand, within psiE at 4266.473 kb on + strand, within psiE at 4266.492 kb on + strand, within psiE at 4266.492 kb on + strand, within psiE at 4266.543 kb on + strand at 4266.575 kb on + strand at 4266.576 kb on - strand at 4266.608 kb on + strand at 4266.608 kb on + strand at 4266.608 kb on + strand at 4266.609 kb on - strand at 4266.609 kb on - strand at 4266.625 kb on - strand at 4266.629 kb on + strand at 4266.761 kb on + strand at 4266.762 kb on - strand at 4266.762 kb on - strand at 4266.762 kb on - strand at 4266.766 kb on + strand at 4266.767 kb on - strand at 4266.767 kb on - strand at 4266.775 kb on + strand at 4266.779 kb on + strand at 4266.896 kb on + strand at 4266.985 kb on - strand, within LU632_RS22345 at 4267.018 kb on + strand, within LU632_RS22345 at 4267.019 kb on - strand, within LU632_RS22345 at 4267.038 kb on - strand, within LU632_RS22345 at 4267.038 kb on - strand, within LU632_RS22345 at 4267.106 kb on - strand, within LU632_RS22345 at 4267.106 kb on - strand, within LU632_RS22345 at 4267.106 kb on - strand, within LU632_RS22345 at 4267.124 kb on + strand, within LU632_RS22345 at 4267.124 kb on + strand, within LU632_RS22345 at 4267.124 kb on + strand, within LU632_RS22345 at 4267.125 kb on - strand, within LU632_RS22345 at 4267.125 kb on - strand, within LU632_RS22345 at 4267.151 kb on - strand, within LU632_RS22345 at 4267.154 kb on + strand, within LU632_RS22345 at 4267.195 kb on + strand, within LU632_RS22345 at 4267.196 kb on - strand, within LU632_RS22345 at 4267.200 kb on + strand, within LU632_RS22345 at 4267.200 kb on + strand, within LU632_RS22345 at 4267.201 kb on - strand, within LU632_RS22345 at 4267.201 kb on - strand, within LU632_RS22345 at 4267.212 kb on + strand, within LU632_RS22345 at 4267.222 kb on + strand, within LU632_RS22345 at 4267.222 kb on + strand, within LU632_RS22345 at 4267.223 kb on - strand, within LU632_RS22345 at 4267.276 kb on + strand, within LU632_RS22345 at 4267.276 kb on + strand, within LU632_RS22345 at 4267.283 kb on + strand, within LU632_RS22345 at 4267.284 kb on - strand, within LU632_RS22345 at 4267.284 kb on - strand, within LU632_RS22345 at 4267.285 kb on + strand, within LU632_RS22345 at 4267.285 kb on + strand, within LU632_RS22345 at 4267.285 kb on + strand, within LU632_RS22345 at 4267.285 kb on + strand, within LU632_RS22345 at 4267.285 kb on + strand, within LU632_RS22345 at 4267.285 kb on + strand, within LU632_RS22345 at 4267.286 kb on - strand, within LU632_RS22345 at 4267.310 kb on - strand, within LU632_RS22345 at 4267.384 kb on + strand, within LU632_RS22345 at 4267.385 kb on - strand, within LU632_RS22345 at 4267.399 kb on + strand, within LU632_RS22345 at 4267.400 kb on - strand, within LU632_RS22345 at 4267.422 kb on + strand, within LU632_RS22345 at 4267.423 kb on - strand, within LU632_RS22345 at 4267.546 kb on + strand, within LU632_RS22345 at 4267.547 kb on - strand, within LU632_RS22345 at 4267.787 kb on + strand, within LU632_RS22345 at 4267.831 kb on + strand, within LU632_RS22345 at 4267.881 kb on - strand, within LU632_RS22345 at 4267.882 kb on + strand, within LU632_RS22345 at 4267.883 kb on - strand, within LU632_RS22345 at 4267.883 kb on - strand, within LU632_RS22345 at 4267.949 kb on + strand, within LU632_RS22345 at 4267.949 kb on + strand, within LU632_RS22345 at 4267.951 kb on + strand, within LU632_RS22345 at 4267.952 kb on - strand, within LU632_RS22345 at 4268.008 kb on - strand, within LU632_RS22345 at 4268.008 kb on - strand, within LU632_RS22345 at 4268.045 kb on - strand, within LU632_RS22345 at 4268.141 kb on - strand, within LU632_RS22345 at 4268.144 kb on + strand, within LU632_RS22345 at 4268.144 kb on + strand, within LU632_RS22345 at 4268.144 kb on + strand, within LU632_RS22345 at 4268.144 kb on + strand, within LU632_RS22345 at 4268.145 kb on - strand, within LU632_RS22345 at 4268.145 kb on - strand, within LU632_RS22345 at 4268.147 kb on + strand, within LU632_RS22345 at 4268.148 kb on - strand, within LU632_RS22345 at 4268.156 kb on - strand, within LU632_RS22345 at 4268.229 kb on - strand, within LU632_RS22345 at 4268.287 kb on + strand, within LU632_RS22345 at 4268.288 kb on - strand, within LU632_RS22345 at 4268.288 kb on - strand, within LU632_RS22345 at 4268.316 kb on - strand, within LU632_RS22345 at 4268.353 kb on - strand, within LU632_RS22345 at 4268.353 kb on - strand, within LU632_RS22345 at 4268.402 kb on - strand, within LU632_RS22345 at 4268.514 kb on - strand, within LU632_RS22345 at 4268.514 kb on - strand, within LU632_RS22345 at 4268.514 kb on - strand, within LU632_RS22345 at 4268.515 kb on + strand, within LU632_RS22345 at 4268.515 kb on + strand, within LU632_RS22345 at 4268.549 kb on + strand, within LU632_RS22345 at 4268.550 kb on - strand, within LU632_RS22345 at 4268.550 kb on - strand, within LU632_RS22345 at 4268.650 kb on + strand at 4268.916 kb on + strand, within LU632_RS22350 at 4268.920 kb on + strand, within LU632_RS22350 at 4268.921 kb on - strand, within LU632_RS22350 at 4268.981 kb on + strand, within LU632_RS22350 at 4269.013 kb on + strand, within LU632_RS22350 at 4269.051 kb on - strand, within LU632_RS22350 at 4269.051 kb on - strand, within LU632_RS22350 at 4269.054 kb on + strand, within LU632_RS22350 at 4269.309 kb on - strand, within LU632_RS22350 at 4269.309 kb on - strand, within LU632_RS22350 at 4269.309 kb on - strand, within LU632_RS22350 at 4269.539 kb on - strand at 4269.682 kb on + strand, within LU632_RS22355 at 4269.682 kb on + strand, within LU632_RS22355
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 4,265,757 - ubiC LU632_RS22335 0.47 +1.7 4,265,797 - ubiC LU632_RS22335 0.55 +0.1 4,265,797 - ubiC LU632_RS22335 0.55 -2.7 4,265,797 - ubiC LU632_RS22335 0.55 +1.1 4,266,010 - -2.6 4,266,071 + +2.3 4,266,160 - +0.2 4,266,178 + +0.9 4,266,178 + -2.0 4,266,218 + psiE LU632_RS22340 0.10 -2.1 4,266,377 + psiE LU632_RS22340 0.50 -1.1 4,266,414 + psiE LU632_RS22340 0.59 -0.1 4,266,424 + psiE LU632_RS22340 0.62 -1.1 4,266,424 + psiE LU632_RS22340 0.62 -1.1 4,266,450 - psiE LU632_RS22340 0.68 +0.0 4,266,453 + psiE LU632_RS22340 0.69 +1.1 4,266,454 - psiE LU632_RS22340 0.69 -1.4 4,266,464 - psiE LU632_RS22340 0.72 +0.1 4,266,473 + psiE LU632_RS22340 0.74 -0.8 4,266,492 + psiE LU632_RS22340 0.79 -1.1 4,266,492 + psiE LU632_RS22340 0.79 -0.3 4,266,543 + -1.5 4,266,575 + +0.3 4,266,576 - -1.7 4,266,608 + -0.6 4,266,608 + +0.0 4,266,608 + +1.6 4,266,609 - +0.3 4,266,609 - -1.4 4,266,625 - -0.6 4,266,629 + -2.4 4,266,761 + -0.4 4,266,762 - +2.0 4,266,762 - +1.5 4,266,762 - +0.2 4,266,766 + -1.1 4,266,767 - -0.4 4,266,767 - +0.8 4,266,775 + +0.6 4,266,779 + +0.2 4,266,896 + -0.8 4,266,985 - LU632_RS22345 0.12 -1.4 4,267,018 + LU632_RS22345 0.14 -2.4 4,267,019 - LU632_RS22345 0.14 +1.2 4,267,038 - LU632_RS22345 0.15 +2.0 4,267,038 - LU632_RS22345 0.15 +1.2 4,267,106 - LU632_RS22345 0.18 +0.5 4,267,106 - LU632_RS22345 0.18 -0.8 4,267,106 - LU632_RS22345 0.18 -4.0 4,267,124 + LU632_RS22345 0.19 +2.3 4,267,124 + LU632_RS22345 0.19 -0.8 4,267,124 + LU632_RS22345 0.19 -1.2 4,267,125 - LU632_RS22345 0.19 -0.6 4,267,125 - LU632_RS22345 0.19 +1.2 4,267,151 - LU632_RS22345 0.20 +0.8 4,267,154 + LU632_RS22345 0.20 -1.5 4,267,195 + LU632_RS22345 0.22 -0.8 4,267,196 - LU632_RS22345 0.22 -0.5 4,267,200 + LU632_RS22345 0.22 -1.4 4,267,200 + LU632_RS22345 0.22 -0.8 4,267,201 - LU632_RS22345 0.23 -1.1 4,267,201 - LU632_RS22345 0.23 -0.4 4,267,212 + LU632_RS22345 0.23 +0.2 4,267,222 + LU632_RS22345 0.24 -1.2 4,267,222 + LU632_RS22345 0.24 +0.1 4,267,223 - LU632_RS22345 0.24 +1.5 4,267,276 + LU632_RS22345 0.26 +2.4 4,267,276 + LU632_RS22345 0.26 +2.9 4,267,283 + LU632_RS22345 0.26 -1.6 4,267,284 - LU632_RS22345 0.26 -0.6 4,267,284 - LU632_RS22345 0.26 +1.2 4,267,285 + LU632_RS22345 0.27 +0.1 4,267,285 + LU632_RS22345 0.27 -0.8 4,267,285 + LU632_RS22345 0.27 +0.7 4,267,285 + LU632_RS22345 0.27 -1.6 4,267,285 + LU632_RS22345 0.27 -2.9 4,267,285 + LU632_RS22345 0.27 +1.8 4,267,286 - LU632_RS22345 0.27 -0.3 4,267,310 - LU632_RS22345 0.28 +0.6 4,267,384 + LU632_RS22345 0.31 +0.8 4,267,385 - LU632_RS22345 0.31 -1.4 4,267,399 + LU632_RS22345 0.32 +0.0 4,267,400 - LU632_RS22345 0.32 +3.6 4,267,422 + LU632_RS22345 0.33 +2.2 4,267,423 - LU632_RS22345 0.33 +1.2 4,267,546 + LU632_RS22345 0.39 +0.2 4,267,547 - LU632_RS22345 0.39 +1.2 4,267,787 + LU632_RS22345 0.50 -0.6 4,267,831 + LU632_RS22345 0.53 -0.8 4,267,881 - LU632_RS22345 0.55 -1.2 4,267,882 + LU632_RS22345 0.55 -2.4 4,267,883 - LU632_RS22345 0.55 -2.6 4,267,883 - LU632_RS22345 0.55 +0.8 4,267,949 + LU632_RS22345 0.58 -1.6 4,267,949 + LU632_RS22345 0.58 +0.0 4,267,951 + LU632_RS22345 0.58 +0.5 4,267,952 - LU632_RS22345 0.58 +1.2 4,268,008 - LU632_RS22345 0.61 -0.4 4,268,008 - LU632_RS22345 0.61 -0.7 4,268,045 - LU632_RS22345 0.63 +0.5 4,268,141 - LU632_RS22345 0.67 +1.8 4,268,144 + LU632_RS22345 0.67 -1.5 4,268,144 + LU632_RS22345 0.67 +0.8 4,268,144 + LU632_RS22345 0.67 +2.8 4,268,144 + LU632_RS22345 0.67 +0.4 4,268,145 - LU632_RS22345 0.68 -1.2 4,268,145 - LU632_RS22345 0.68 -0.8 4,268,147 + LU632_RS22345 0.68 +0.8 4,268,148 - LU632_RS22345 0.68 +0.4 4,268,156 - LU632_RS22345 0.68 +0.5 4,268,229 - LU632_RS22345 0.72 -0.1 4,268,287 + LU632_RS22345 0.74 -1.4 4,268,288 - LU632_RS22345 0.74 -2.6 4,268,288 - LU632_RS22345 0.74 -0.1 4,268,316 - LU632_RS22345 0.76 -2.4 4,268,353 - LU632_RS22345 0.77 -2.0 4,268,353 - LU632_RS22345 0.77 +0.6 4,268,402 - LU632_RS22345 0.80 -0.2 4,268,514 - LU632_RS22345 0.85 +0.2 4,268,514 - LU632_RS22345 0.85 -0.2 4,268,514 - LU632_RS22345 0.85 -2.6 4,268,515 + LU632_RS22345 0.85 -0.2 4,268,515 + LU632_RS22345 0.85 -0.6 4,268,549 + LU632_RS22345 0.87 -0.4 4,268,550 - LU632_RS22345 0.87 -0.8 4,268,550 - LU632_RS22345 0.87 -0.8 4,268,650 + -0.4 4,268,916 + LU632_RS22350 0.12 -2.0 4,268,920 + LU632_RS22350 0.13 -1.2 4,268,921 - LU632_RS22350 0.13 -0.4 4,268,981 + LU632_RS22350 0.21 -0.7 4,269,013 + LU632_RS22350 0.25 -2.2 4,269,051 - LU632_RS22350 0.30 -0.4 4,269,051 - LU632_RS22350 0.30 +1.1 4,269,054 + LU632_RS22350 0.30 -0.6 4,269,309 - LU632_RS22350 0.64 +0.8 4,269,309 - LU632_RS22350 0.64 -1.0 4,269,309 - LU632_RS22350 0.64 +0.2 4,269,539 - -1.4 4,269,682 + LU632_RS22355 0.16 +0.7 4,269,682 + LU632_RS22355 0.16 -0.2
Or see this region's nucleotide sequence