Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21890

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
4,179,714	+	gpsA	LU632_RS21875	0.83	-4.8
4,179,714	+	gpsA	LU632_RS21875	0.83	-1.7
4,179,714	+	gpsA	LU632_RS21875	0.83	-1.5
4,179,715	-	gpsA	LU632_RS21875	0.83	-2.5
4,179,735	-	gpsA	LU632_RS21875	0.85	-4.0
4,179,737	+	gpsA	LU632_RS21875	0.85	-3.9
4,179,738	-	gpsA	LU632_RS21875	0.86	-3.8
4,179,738	-	gpsA	LU632_RS21875	0.86	-5.0
4,179,776	+	gpsA	LU632_RS21875	0.89	+0.1
4,179,797	+				-1.2
4,179,798	-				-4.3
4,179,818	+				-3.3
4,179,818	+				-1.7
4,179,819	-				-1.9
4,179,885	+				+0.1
4,179,975	-	secB	LU632_RS21880	0.19	+1.2
4,179,975	-	secB	LU632_RS21880	0.19	-0.5
4,180,013	-	secB	LU632_RS21880	0.28	-3.7
4,180,050	+	secB	LU632_RS21880	0.35	-0.9
4,180,231	+	secB	LU632_RS21880	0.74	-1.2
4,180,231	+	secB	LU632_RS21880	0.74	-1.2
4,180,301	-	secB	LU632_RS21880	0.89	-1.2
4,180,301	-	secB	LU632_RS21880	0.89	-2.3
4,180,302	+	secB	LU632_RS21880	0.89	+1.9
4,180,303	-	secB	LU632_RS21880	0.90	-3.5
4,180,365	-				-3.6
4,180,396	-				-0.9
4,180,401	-				-0.1
4,180,475	-	grxC	LU632_RS21885	0.32	-0.9
4,180,546	+	grxC	LU632_RS21885	0.60	-0.5
4,180,754	-		LU632_RS21890	0.21	-0.0
4,180,953	-		LU632_RS21890	0.67	-2.2
4,181,025	-		LU632_RS21890	0.84	-2.5
4,181,083	+				-4.1
4,181,086	+				-1.2
4,181,086	+				-2.7
4,181,130	+				-2.0
4,181,192	+				-1.3
4,181,230	-				+0.4
4,181,376	-				-2.0
4,181,416	+				+0.6
4,181,518	-				-2.9
4,181,569	+	envC	LU632_RS21895	0.12	-4.5
4,181,570	-	envC	LU632_RS21895	0.12	-3.3
4,181,629	-	envC	LU632_RS21895	0.16	-3.4
4,181,903	-	envC	LU632_RS21895	0.37	-0.9
4,181,995	-	envC	LU632_RS21895	0.44	-2.6