Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21005 and LU632_RS21010 are separated by 8 nucleotides LU632_RS21010 and LU632_RS21015 are separated by 71 nucleotides LU632_RS21015 and LU632_RS21020 overlap by 78 nucleotides
LU632_RS21005: LU632_RS21005 - U32 family peptidase, at 4,013,562 to 4,014,557
_RS21005
LU632_RS21010: LU632_RS21010 - U32 family peptidase, at 4,014,566 to 4,015,459
_RS21010
LU632_RS21015: LU632_RS21015 - IS5 family transposase, at 4,015,531 to 4,016,041
_RS21015
LU632_RS21020: LU632_RS21020 - IS110 family transposase, at 4,015,964 to 4,017,026
_RS21020
Position (kb) 4015
4016
4017 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4014.538 kb on - strand at 4014.573 kb on - strand at 4014.573 kb on - strand at 4014.615 kb on + strand at 4014.616 kb on - strand at 4014.658 kb on + strand, within LU632_RS21010 at 4014.662 kb on + strand, within LU632_RS21010 at 4014.678 kb on + strand, within LU632_RS21010 at 4014.679 kb on - strand, within LU632_RS21010 at 4014.809 kb on - strand, within LU632_RS21010 at 4014.921 kb on - strand, within LU632_RS21010 at 4014.946 kb on - strand, within LU632_RS21010 at 4015.036 kb on + strand, within LU632_RS21010 at 4015.080 kb on + strand, within LU632_RS21010 at 4015.156 kb on + strand, within LU632_RS21010 at 4015.352 kb on - strand, within LU632_RS21010 at 4015.417 kb on + strand at 4015.418 kb on - strand at 4015.418 kb on - strand at 4015.471 kb on - strand at 4015.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 4,014,538 - -0.6 4,014,573 - -0.7 4,014,573 - -1.4 4,014,615 + -0.8 4,014,616 - +0.3 4,014,658 + LU632_RS21010 0.10 -1.4 4,014,662 + LU632_RS21010 0.11 +2.5 4,014,678 + LU632_RS21010 0.13 +4.0 4,014,679 - LU632_RS21010 0.13 -0.2 4,014,809 - LU632_RS21010 0.27 +0.2 4,014,921 - LU632_RS21010 0.40 +0.2 4,014,946 - LU632_RS21010 0.43 +2.1 4,015,036 + LU632_RS21010 0.53 -1.6 4,015,080 + LU632_RS21010 0.57 -1.3 4,015,156 + LU632_RS21010 0.66 -1.4 4,015,352 - LU632_RS21010 0.88 +0.2 4,015,417 + -1.6 4,015,418 - +0.5 4,015,418 - -0.8 4,015,471 - +0.3 4,015,471 - +1.0
Or see this region's nucleotide sequence