Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20840

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
3,976,488	-		LU632_RS20835	0.50	-2.6
3,976,488	-		LU632_RS20835	0.50	-0.1
3,976,491	+		LU632_RS20835	0.50	-1.4
3,976,491	+		LU632_RS20835	0.50	-0.2
3,976,492	-		LU632_RS20835	0.50	-1.7
3,976,492	-		LU632_RS20835	0.50	-1.8
3,976,529	+		LU632_RS20835	0.53	+1.2
3,976,586	+		LU632_RS20835	0.57	-1.5
3,976,587	-		LU632_RS20835	0.57	+2.2
3,976,604	+		LU632_RS20835	0.58	-0.2
3,976,620	+		LU632_RS20835	0.59	-0.6
3,976,625	+		LU632_RS20835	0.60	-1.6
3,976,743	-		LU632_RS20835	0.68	+0.8
3,976,743	-		LU632_RS20835	0.68	+1.2
3,976,743	-		LU632_RS20835	0.68	+2.5
3,976,824	-		LU632_RS20835	0.74	-1.6
3,976,825	+		LU632_RS20835	0.74	-1.6
3,976,825	+		LU632_RS20835	0.74	+1.4
3,976,825	+		LU632_RS20835	0.74	+1.2
3,976,836	-		LU632_RS20835	0.75	-0.4
3,976,852	-		LU632_RS20835	0.76	+0.2
3,976,853	+		LU632_RS20835	0.76	-0.3
3,976,853	+		LU632_RS20835	0.76	+2.2
3,976,856	+		LU632_RS20835	0.77	-0.8
3,976,934	+		LU632_RS20835	0.82	-0.3
3,976,935	-		LU632_RS20835	0.82	+1.4
3,976,935	-		LU632_RS20835	0.82	-1.1
3,977,049	+				+0.6
3,977,049	-				+0.1
3,977,083	+				-1.1
3,977,189	-				+1.5
3,977,189	-				+1.2
3,977,190	+				-0.8
3,977,190	+				+0.5
3,977,190	+				+2.9
3,977,191	-				+1.4
3,977,191	-				+0.5
3,977,226	-				+1.7
3,977,387	+				+0.9
3,977,467	-				+1.0
3,977,713	-		LU632_RS20840	0.29	-2.3
3,977,713	-		LU632_RS20840	0.29	-0.9
3,977,713	-		LU632_RS20840	0.29	+1.4
3,977,846	+		LU632_RS20840	0.39	+0.8
3,977,846	+		LU632_RS20840	0.39	+1.2
3,977,846	+		LU632_RS20840	0.39	+0.2
3,977,847	-		LU632_RS20840	0.39	-2.4
3,977,857	-		LU632_RS20840	0.40	+1.2
3,977,936	-		LU632_RS20840	0.46	+1.2
3,977,936	-		LU632_RS20840	0.46	+3.7
3,977,987	+		LU632_RS20840	0.50	+0.2
3,978,122	+		LU632_RS20840	0.61	+0.7
3,978,122	+		LU632_RS20840	0.61	+1.0
3,978,122	+		LU632_RS20840	0.61	-0.8
3,978,123	-		LU632_RS20840	0.61	+1.8
3,978,123	-		LU632_RS20840	0.61	-0.5
3,978,161	+		LU632_RS20840	0.64	-0.2
3,978,161	+		LU632_RS20840	0.64	+2.2
3,978,162	-		LU632_RS20840	0.64	+2.6
3,978,162	-		LU632_RS20840	0.64	+0.9
3,978,240	+		LU632_RS20840	0.70	-0.2
3,978,244	+		LU632_RS20840	0.70	-0.2
3,978,244	+		LU632_RS20840	0.70	-1.4
3,978,244	+		LU632_RS20840	0.70	+2.4
3,978,244	+		LU632_RS20840	0.70	+2.2
3,978,245	-		LU632_RS20840	0.70	-2.0
3,978,246	+		LU632_RS20840	0.70	+0.3
3,978,423	-		LU632_RS20840	0.84	+1.8
3,978,456	+		LU632_RS20840	0.86	+2.8
3,978,471	-		LU632_RS20840	0.88	+4.0
3,978,492	+		LU632_RS20840	0.89	+0.7
3,978,493	-		LU632_RS20840	0.89	+1.2
3,978,512	+				-1.8
3,978,512	+				+3.9
3,978,512	+				-2.7
3,978,512	+				-2.3
3,978,710	+				-0.5
3,978,711	-				-1.2
3,978,894	+				-2.2
3,978,895	-				+1.3