Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20355

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
3,871,615	-		LU632_RS20345	0.87	+1.4
3,871,702	+				-0.1
3,871,702	+				-0.7
3,871,702	+				+0.7
3,871,702	+				-0.4
3,871,703	-				-0.6
3,871,704	+				-1.3
3,871,704	+				+0.5
3,871,704	+				+0.6
3,871,705	-				+0.2
3,871,705	-				-0.1
3,871,769	+				+1.2
3,871,774	-				+0.9
3,871,774	-				+0.7
3,872,096	+		LU632_RS20350	0.43	-0.4
3,872,097	-		LU632_RS20350	0.43	+1.2
3,872,097	-		LU632_RS20350	0.43	-0.9
3,872,098	+		LU632_RS20350	0.43	-0.7
3,872,099	-		LU632_RS20350	0.43	+2.6
3,872,099	-		LU632_RS20350	0.43	+0.2
3,872,190	+		LU632_RS20350	0.55	-0.9
3,872,191	-		LU632_RS20350	0.55	+0.6
3,872,191	-		LU632_RS20350	0.55	+0.2
3,872,264	+		LU632_RS20350	0.64	+0.3
3,872,375	+		LU632_RS20350	0.77	+0.2
3,872,376	-		LU632_RS20350	0.77	+0.2
3,872,376	-		LU632_RS20350	0.77	+1.8
3,872,378	-		LU632_RS20350	0.78	-0.2
3,872,403	+		LU632_RS20350	0.81	+0.6
3,872,464	+		LU632_RS20350	0.88	+0.4
3,872,465	-		LU632_RS20350	0.88	+1.1
3,872,469	-		LU632_RS20350	0.89	+1.2
3,872,469	-		LU632_RS20350	0.89	-1.9
3,872,469	-		LU632_RS20350	0.89	+2.5
3,872,523	-				+1.4
3,872,587	+				-1.8
3,872,698	+		LU632_RS20355	0.14	-1.4
3,872,699	-		LU632_RS20355	0.14	+1.7
3,872,740	+		LU632_RS20355	0.18	+0.1
3,872,753	+		LU632_RS20355	0.19	+0.5
3,872,753	+		LU632_RS20355	0.19	-1.5
3,872,782	+		LU632_RS20355	0.22	-0.8
3,872,782	+		LU632_RS20355	0.22	-0.1
3,872,837	+		LU632_RS20355	0.27	+0.4
3,872,838	-		LU632_RS20355	0.27	-0.2
3,872,920	+		LU632_RS20355	0.35	+3.1
3,873,068	-		LU632_RS20355	0.49	+0.9
3,873,068	-		LU632_RS20355	0.49	+0.2
3,873,174	+		LU632_RS20355	0.60	+0.7
3,873,175	-		LU632_RS20355	0.60	-2.6
3,873,274	+		LU632_RS20355	0.69	+1.7
3,873,378	+		LU632_RS20355	0.79	-0.6
3,873,378	+		LU632_RS20355	0.79	+0.1
3,873,379	-		LU632_RS20355	0.80	+0.2
3,873,394	+		LU632_RS20355	0.81	+1.6
3,873,395	-		LU632_RS20355	0.81	+0.1
3,873,534	+				+1.2
3,873,583	+				+1.0
3,873,606	+				-0.8
3,873,606	+				+3.4
3,873,606	+				-0.3
3,873,606	+				-0.3
3,873,607	-				+0.6
3,873,608	+				-1.0
3,873,646	+				+1.2
3,873,647	-				+0.4
3,873,647	-				+1.2
3,873,647	-				-0.3
3,873,647	-				-1.1
3,873,722	-				+0.0
3,873,726	+				-0.8
3,873,727	-				-0.9
3,873,771	+				+0.9
3,873,772	-				+1.2
3,873,781	-				+3.1
3,873,784	+				+0.7
3,873,801	+				+0.2
3,873,802	-				-0.4
3,873,928	-		LU632_RS20360	0.11	-3.4
3,874,065	+		LU632_RS20360	0.17	-0.8
3,874,065	+		LU632_RS20360	0.17	-3.1
3,874,080	+		LU632_RS20360	0.17	-0.9
3,874,081	-		LU632_RS20360	0.18	-1.4
3,874,096	+		LU632_RS20360	0.18	+2.6
3,874,097	-		LU632_RS20360	0.18	+1.0
3,874,105	+		LU632_RS20360	0.19	+0.8
3,874,105	+		LU632_RS20360	0.19	+0.4
3,874,108	-		LU632_RS20360	0.19	-0.8
3,874,191	+		LU632_RS20360	0.22	-2.7
3,874,191	+		LU632_RS20360	0.22	-1.1
3,874,192	-		LU632_RS20360	0.22	-1.4
3,874,195	+		LU632_RS20360	0.22	-2.0
3,874,196	-		LU632_RS20360	0.22	-4.2
3,874,196	-		LU632_RS20360	0.22	-0.6
3,874,196	-		LU632_RS20360	0.22	+1.7
3,874,197	+		LU632_RS20360	0.22	-0.3
3,874,233	+		LU632_RS20360	0.24	+1.2
3,874,233	+		LU632_RS20360	0.24	+0.5
3,874,233	+		LU632_RS20360	0.24	-0.2
3,874,233	+		LU632_RS20360	0.24	+3.2
3,874,234	-		LU632_RS20360	0.24	+2.6
3,874,237	+		LU632_RS20360	0.24	+0.1
3,874,248	-		LU632_RS20360	0.24	-1.7
3,874,282	+		LU632_RS20360	0.26	-1.6
3,874,311	+		LU632_RS20360	0.27	-0.9
3,874,311	+		LU632_RS20360	0.27	-0.2
3,874,312	-		LU632_RS20360	0.27	+0.6
3,874,320	+		LU632_RS20360	0.27	+1.0
3,874,320	+		LU632_RS20360	0.27	-1.5
3,874,447	-		LU632_RS20360	0.33	+0.6
3,874,447	-		LU632_RS20360	0.33	+0.5
3,874,511	-		LU632_RS20360	0.35	-0.7
3,874,512	+		LU632_RS20360	0.36	-0.2
3,874,512	+		LU632_RS20360	0.36	+0.8
3,874,512	+		LU632_RS20360	0.36	-0.4
3,874,512	+		LU632_RS20360	0.36	+1.8
3,874,512	+		LU632_RS20360	0.36	-2.1
3,874,512	+		LU632_RS20360	0.36	+0.8
3,874,513	-		LU632_RS20360	0.36	-1.6
3,874,513	-		LU632_RS20360	0.36	+0.9
3,874,513	-		LU632_RS20360	0.36	-2.1
3,874,513	-		LU632_RS20360	0.36	+0.1
3,874,513	-		LU632_RS20360	0.36	+0.0
3,874,513	-		LU632_RS20360	0.36	-1.8
3,874,513	-		LU632_RS20360	0.36	-0.4
3,874,521	+		LU632_RS20360	0.36	-1.0
3,874,521	+		LU632_RS20360	0.36	+0.2
3,874,521	+		LU632_RS20360	0.36	+0.3
3,874,521	+		LU632_RS20360	0.36	+1.3
3,874,521	+		LU632_RS20360	0.36	+0.0
3,874,541	-		LU632_RS20360	0.37	-0.0
3,874,548	+		LU632_RS20360	0.37	+1.8
3,874,552	+		LU632_RS20360	0.37	+1.6
3,874,553	-		LU632_RS20360	0.37	+2.0