Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20330

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
3,866,127	-		LU632_RS20315	0.36	+3.8
3,866,136	+		LU632_RS20315	0.39	-1.3
3,866,136	+		LU632_RS20315	0.39	-1.6
3,866,137	-		LU632_RS20315	0.39	+3.5
3,866,184	+		LU632_RS20315	0.53	+1.2
3,866,184	+		LU632_RS20315	0.53	-1.4
3,866,185	-		LU632_RS20315	0.54	-3.3
3,866,185	-		LU632_RS20315	0.54	+1.2
3,866,313	-				-1.9
3,866,553	+		LU632_RS20320	0.42	-0.1
3,866,754	-				+1.0
3,866,754	-				+1.1
3,866,768	+		LU632_RS20325	0.11	+1.3
3,866,768	+		LU632_RS20325	0.11	-1.0
3,866,768	+		LU632_RS20325	0.11	+0.7
3,866,780	+		LU632_RS20325	0.17	-0.3
3,866,781	-		LU632_RS20325	0.18	-0.4
3,866,826	+		LU632_RS20325	0.41	-0.7
3,866,829	-		LU632_RS20325	0.43	-0.9
3,866,835	+		LU632_RS20325	0.46	-1.1
3,866,861	+		LU632_RS20325	0.59	+0.8
3,867,063	+				-0.0
3,867,090	+				+0.7
3,867,090	+				+2.2
3,867,090	+				+1.6
3,867,090	+				+0.5
3,867,090	+				+1.6
3,867,202	+		LU632_RS20330	0.20	-2.5
3,867,262	+		LU632_RS20330	0.28	-1.3
3,867,919	+				-2.0
3,867,920	-				+0.8
3,867,926	-				-3.1
3,867,938	-				-0.6
3,868,177	-				-0.4
3,868,415	-	mrdA	LU632_RS20335	0.20	+0.2
3,868,511	-	mrdA	LU632_RS20335	0.25	-0.0
3,868,525	+	mrdA	LU632_RS20335	0.25	-1.5
3,868,562	-	mrdA	LU632_RS20335	0.27	+1.4
3,868,588	+	mrdA	LU632_RS20335	0.29	+0.7
3,868,624	+	mrdA	LU632_RS20335	0.31	+0.3
3,868,624	+	mrdA	LU632_RS20335	0.31	-3.3
3,868,625	-	mrdA	LU632_RS20335	0.31	+1.2
3,868,625	-	mrdA	LU632_RS20335	0.31	-2.7
3,868,647	+	mrdA	LU632_RS20335	0.32	-1.1
3,868,709	+	mrdA	LU632_RS20335	0.35	+0.1
3,868,709	+	mrdA	LU632_RS20335	0.35	-1.8
3,868,710	-	mrdA	LU632_RS20335	0.35	+0.2
3,868,710	-	mrdA	LU632_RS20335	0.35	-1.1