Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18965

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
3,578,765	-	rdgC	LU632_RS18955	0.44	-0.1
3,578,914	+	rdgC	LU632_RS18955	0.60	+2.5
3,578,915	-	rdgC	LU632_RS18955	0.61	+2.4
3,578,934	+	rdgC	LU632_RS18955	0.63	-1.8
3,579,095	+	rdgC	LU632_RS18955	0.80	+0.2
3,579,096	-	rdgC	LU632_RS18955	0.80	-1.0
3,579,096	-	rdgC	LU632_RS18955	0.80	-0.1
3,579,096	-	rdgC	LU632_RS18955	0.80	+0.0
3,579,133	+	rdgC	LU632_RS18955	0.84	-0.5
3,579,134	-	rdgC	LU632_RS18955	0.85	+1.9
3,579,158	-	rdgC	LU632_RS18955	0.87	-2.1
3,579,158	-	rdgC	LU632_RS18955	0.87	+1.0
3,579,239	-				+0.2
3,579,276	+				-1.0
3,579,276	+				+6.3
3,579,277	-				+0.5
3,579,313	+				-0.6
3,579,337	+				-0.3
3,579,385	-	ppnP	LU632_RS18960	0.25	-0.1
3,579,389	+	ppnP	LU632_RS18960	0.26	+0.0
3,579,389	+	ppnP	LU632_RS18960	0.26	+1.8
3,579,390	-	ppnP	LU632_RS18960	0.27	-1.8
3,579,393	+	ppnP	LU632_RS18960	0.28	+1.2
3,579,393	+	ppnP	LU632_RS18960	0.28	-0.5
3,579,410	-	ppnP	LU632_RS18960	0.34	-0.7
3,579,410	-	ppnP	LU632_RS18960	0.34	+1.5
3,579,499	+	ppnP	LU632_RS18960	0.64	+0.0
3,579,500	-	ppnP	LU632_RS18960	0.65	+0.7
3,579,608	+				+0.8
3,579,609	-				-2.0
3,579,614	+				-1.3
3,579,615	-				-0.7
3,579,615	-				+0.7
3,579,616	+				-2.1
3,579,617	-				-2.8
3,579,617	-				+1.0
3,579,633	+				-2.0
3,579,644	+				-2.3
3,579,672	+				-0.5
3,579,716	-				+0.9
3,579,738	+				+2.0
3,579,775	+				+0.0
3,579,776	-				+0.2
3,579,776	-				+2.1
3,579,794	+				-1.7
3,579,795	-				+0.0
3,579,796	+				-1.3
3,579,834	+		LU632_RS18965	0.12	-1.6
3,579,886	+		LU632_RS18965	0.18	-0.3
3,579,886	+		LU632_RS18965	0.18	-0.7
3,579,887	-		LU632_RS18965	0.18	+2.6
3,579,973	+		LU632_RS18965	0.29	-1.3
3,579,974	-		LU632_RS18965	0.29	+0.0
3,579,974	-		LU632_RS18965	0.29	-2.0
3,579,974	-		LU632_RS18965	0.29	+0.1
3,579,975	+		LU632_RS18965	0.29	-0.8
3,579,976	-		LU632_RS18965	0.29	-1.5
3,579,976	-		LU632_RS18965	0.29	+1.0
3,579,993	+		LU632_RS18965	0.31	-1.3
3,579,993	+		LU632_RS18965	0.31	-1.0
3,579,993	+		LU632_RS18965	0.31	-2.1
3,579,994	-		LU632_RS18965	0.31	+1.0
3,579,994	-		LU632_RS18965	0.31	-2.2
3,579,994	-		LU632_RS18965	0.31	+0.0
3,579,994	-		LU632_RS18965	0.31	+0.3
3,580,110	+		LU632_RS18965	0.45	-1.1
3,580,111	-		LU632_RS18965	0.45	-0.6
3,580,172	+		LU632_RS18965	0.53	-0.8
3,580,436	-		LU632_RS18965	0.85	-0.5
3,580,477	+				-2.4
3,580,572	+				-0.5
3,580,574	+				+0.5
3,580,574	+				-0.5
3,580,575	-				+1.0
3,580,626	-				+0.0
3,580,633	+				+2.5
3,580,740	+				+1.0
3,580,740	+				-0.3
3,580,740	+				-0.5
3,580,741	-				+0.0
3,580,741	-				-0.6
3,580,783	+		LU632_RS18970	0.21	+1.7
3,580,895	-		LU632_RS18970	0.80	+0.5
3,580,897	+		LU632_RS18970	0.81	+1.9
3,581,004	+				+0.6
3,581,007	-				+0.3
3,581,095	+				-0.5
3,581,096	-				-0.6
3,581,294	-				+0.3
3,581,294	-				-3.1
3,581,296	+				-2.1
3,581,303	+				+1.8
3,581,304	-				-2.0
3,581,340	+	aroL	LU632_RS18975	0.15	-1.3
3,581,340	+	aroL	LU632_RS18975	0.15	+0.4
3,581,340	+	aroL	LU632_RS18975	0.15	+0.2
3,581,340	+	aroL	LU632_RS18975	0.15	+0.2
3,581,340	+	aroL	LU632_RS18975	0.15	-2.6
3,581,341	-	aroL	LU632_RS18975	0.15	+0.4
3,581,341	-	aroL	LU632_RS18975	0.15	+0.2
3,581,469	-	aroL	LU632_RS18975	0.40	-0.3
3,581,469	-	aroL	LU632_RS18975	0.40	+2.4
3,581,469	-	aroL	LU632_RS18975	0.40	+2.1
3,581,490	+	aroL	LU632_RS18975	0.44	-1.1
3,581,494	+	aroL	LU632_RS18975	0.44	+0.2
3,581,495	-	aroL	LU632_RS18975	0.45	+1.1
3,581,495	-	aroL	LU632_RS18975	0.45	-1.5
3,581,495	-	aroL	LU632_RS18975	0.45	+0.1