Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18480

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
3,491,856	-				-1.9
3,492,072	-		LU632_RS18475	0.22	-0.7
3,492,144	-		LU632_RS18475	0.34	-0.3
3,492,298	-		LU632_RS18475	0.60	-2.5
3,493,000	+		LU632_RS18480	0.46	-0.1
3,493,046	+		LU632_RS18480	0.53	+1.6
3,493,047	-		LU632_RS18480	0.54	-0.4
3,493,047	-		LU632_RS18480	0.54	-0.2
3,493,057	-		LU632_RS18480	0.55	+1.4
3,493,079	+		LU632_RS18480	0.59	-0.5
3,493,095	-		LU632_RS18480	0.62	-1.0
3,493,095	-		LU632_RS18480	0.62	-2.1
3,493,143	+		LU632_RS18480	0.70	-3.1
3,493,186	-		LU632_RS18480	0.77	+0.3
3,493,206	-		LU632_RS18480	0.81	-0.1
3,493,206	-		LU632_RS18480	0.81	-1.1
3,493,243	+		LU632_RS18480	0.87	-1.2
3,493,244	-		LU632_RS18480	0.87	-1.0
3,493,244	-		LU632_RS18480	0.87	+0.7
3,493,244	-		LU632_RS18480	0.87	-2.4
3,493,244	-		LU632_RS18480	0.87	+0.0
3,493,244	-		LU632_RS18480	0.87	+0.4
3,493,297	-				+1.8
3,493,326	+				-1.0
3,493,326	+				+0.4
3,493,326	+				-0.8
3,493,328	+				-0.1
3,493,329	-				-2.3
3,493,336	+				+0.0
3,493,337	-				+2.6
3,493,337	-				-0.6
3,493,446	+				+1.8
3,493,446	+				-2.7
3,493,446	+				-2.3
3,493,447	-				-1.1
3,493,447	-				+0.4
3,493,447	-				-1.3
3,493,448	+				+0.9
3,493,448	+				-1.6
3,493,448	+				-0.6
3,493,449	-				-2.9
3,493,637	+	queA	LU632_RS18485	0.13	-1.8
3,493,955	-	queA	LU632_RS18485	0.42	-2.0
3,494,121	-	queA	LU632_RS18485	0.58	+2.0
3,494,169	+	queA	LU632_RS18485	0.62	-0.9
3,494,170	-	queA	LU632_RS18485	0.62	+1.4
3,494,172	+	queA	LU632_RS18485	0.63	+1.0
3,494,173	-	queA	LU632_RS18485	0.63	+1.7
3,494,173	-	queA	LU632_RS18485	0.63	+2.1
3,494,185	+	queA	LU632_RS18485	0.64	+0.2
3,494,186	-	queA	LU632_RS18485	0.64	+1.9
3,494,210	+	queA	LU632_RS18485	0.66	-0.6
3,494,210	+	queA	LU632_RS18485	0.66	+0.6
3,494,229	+	queA	LU632_RS18485	0.68	-1.0