Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18400

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
3,478,339	+				-2.0
3,478,340	-				+1.3
3,478,469	+				-0.4
3,478,469	+				+0.2
3,478,469	+				-0.2
3,478,481	+				+0.0
3,478,482	-				-0.6
3,478,482	-				-1.6
3,478,536	+				+0.2
3,478,557	+				+1.0
3,478,562	+				+0.0
3,478,562	+				+0.7
3,478,562	+				+0.6
3,478,563	-				+0.0
3,478,589	-				+1.0
3,478,677	-				-1.3
3,478,902	-		LU632_RS18400	0.23	-1.6
3,479,393	+		LU632_RS18400	0.59	+1.0
3,479,767	-		LU632_RS18400	0.86	-2.6
3,479,768	+		LU632_RS18400	0.86	-2.0
3,479,769	-		LU632_RS18400	0.87	+1.0
3,479,984	+				-0.6
3,479,999	+				-1.0
3,480,057	+				+1.6
3,480,058	-				+0.8
3,480,058	-				+0.6
3,480,075	+				+0.0
3,480,075	+				-1.9
3,480,076	-				+0.2
3,480,078	-				-2.4
3,480,123	+		LU632_RS18405	0.15	+1.3
3,480,124	-		LU632_RS18405	0.15	-2.6
3,480,124	-		LU632_RS18405	0.15	-1.8
3,480,124	-		LU632_RS18405	0.15	+0.2
3,480,217	-		LU632_RS18405	0.28	+0.6
3,480,217	-		LU632_RS18405	0.28	+0.3
3,480,220	-		LU632_RS18405	0.28	-2.6
3,480,251	+		LU632_RS18405	0.32	-0.6
3,480,252	-		LU632_RS18405	0.32	+1.0
3,480,323	+		LU632_RS18405	0.42	-0.6
3,480,498	+		LU632_RS18405	0.66	-1.1
3,480,498	+		LU632_RS18405	0.66	-3.8
3,480,499	-		LU632_RS18405	0.67	-1.4
3,480,499	-		LU632_RS18405	0.67	+1.0
3,480,624	-		LU632_RS18405	0.84	+0.8
3,480,624	-		LU632_RS18405	0.84	-1.3
3,480,683	+				+1.2
3,480,684	-				+0.0
3,480,684	-				+2.0
3,480,744	-				-2.9
3,480,768	+				-1.2
3,480,768	+				-1.0
3,480,850	+				+0.5
3,480,850	+				+2.0
3,480,850	+				+1.4
3,480,851	-				-1.3
3,480,851	-				+0.1
3,480,851	-				-0.7
3,480,851	-				-2.1
3,480,852	+				-0.6
3,480,919	-				+1.5