Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18075

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
3,413,155	+		LU632_RS18070	0.41	-1.0
3,413,155	+		LU632_RS18070	0.41	-0.3
3,413,155	+		LU632_RS18070	0.41	-1.0
3,413,156	-		LU632_RS18070	0.41	-0.3
3,413,156	-		LU632_RS18070	0.41	-1.1
3,413,156	-		LU632_RS18070	0.41	-0.6
3,413,156	-		LU632_RS18070	0.41	+1.0
3,413,362	-		LU632_RS18070	0.59	+0.4
3,413,389	-		LU632_RS18070	0.61	+1.7
3,413,389	-		LU632_RS18070	0.61	+0.0
3,413,391	+		LU632_RS18070	0.61	-2.0
3,413,400	+		LU632_RS18070	0.62	-0.6
3,413,401	-		LU632_RS18070	0.62	+2.5
3,413,412	-		LU632_RS18070	0.63	-1.0
3,413,444	-		LU632_RS18070	0.65	-2.2
3,413,486	+		LU632_RS18070	0.69	+1.0
3,413,486	+		LU632_RS18070	0.69	+0.7
3,413,486	+		LU632_RS18070	0.69	+1.0
3,413,486	+		LU632_RS18070	0.69	-0.6
3,413,567	-		LU632_RS18070	0.76	-2.3
3,413,589	-		LU632_RS18070	0.78	-1.6
3,413,726	+		LU632_RS18070	0.89	-1.8
3,413,784	+				-0.0
3,414,024	-				+0.2
3,414,024	-				+1.6
3,414,061	+				-1.6
3,414,106	-				-0.9
3,414,145	-				+4.9
3,414,165	+				-3.7
3,414,165	+				+1.9
3,414,165	+				+2.8
3,414,166	-				-1.0
3,414,166	-				-2.7
3,414,217	-				-3.3
3,414,273	-		LU632_RS18075	0.12	+0.6
3,414,282	-		LU632_RS18075	0.12	+0.6
3,414,462	+		LU632_RS18075	0.23	-0.0
3,414,467	+		LU632_RS18075	0.23	-2.7
3,414,675	+		LU632_RS18075	0.35	+0.4
3,414,676	-		LU632_RS18075	0.35	+1.6
3,414,676	-		LU632_RS18075	0.35	-1.9
3,414,692	+		LU632_RS18075	0.36	-0.0
3,414,692	+		LU632_RS18075	0.36	+0.3
3,414,693	-		LU632_RS18075	0.36	-1.9
3,414,693	-		LU632_RS18075	0.36	-1.8
3,414,696	-		LU632_RS18075	0.37	+1.0
3,414,696	-		LU632_RS18075	0.37	+1.5
3,414,813	-		LU632_RS18075	0.44	-1.6
3,414,926	+		LU632_RS18075	0.50	+0.5
3,414,926	+		LU632_RS18075	0.50	-0.5
3,414,974	+		LU632_RS18075	0.53	+2.1
3,414,975	-		LU632_RS18075	0.53	-2.8
3,415,011	+		LU632_RS18075	0.55	-1.7
3,415,011	+		LU632_RS18075	0.55	+1.4
3,415,153	-		LU632_RS18075	0.64	+1.1
3,415,153	-		LU632_RS18075	0.64	-0.5
3,415,209	+		LU632_RS18075	0.67	+0.1
3,415,209	+		LU632_RS18075	0.67	-2.0
3,415,209	+		LU632_RS18075	0.67	-2.0
3,415,210	-		LU632_RS18075	0.67	-1.3
3,415,210	-		LU632_RS18075	0.67	-0.3
3,415,210	-		LU632_RS18075	0.67	+1.9
3,415,283	+		LU632_RS18075	0.72	+2.0
3,415,284	-		LU632_RS18075	0.72	-0.1
3,415,284	-		LU632_RS18075	0.72	+0.8
3,415,284	-		LU632_RS18075	0.72	-2.2
3,415,313	+		LU632_RS18075	0.73	-0.0
3,415,645	+				+1.0
3,415,645	+				-1.0
3,415,704	+				-1.2
3,415,704	+				-3.3
3,415,705	-				-2.5
3,415,755	+				-2.3
3,415,791	+				-1.3
3,415,791	+				+1.2
3,415,885	-				-0.8
3,415,885	-				+0.5
3,415,885	-				+0.4
3,415,911	+		LU632_RS18080	0.10	+0.5
3,415,965	+		LU632_RS18080	0.14	+0.2
3,415,969	+		LU632_RS18080	0.15	+0.8
3,415,969	+		LU632_RS18080	0.15	-2.2
3,415,970	-		LU632_RS18080	0.15	-1.3
3,415,970	-		LU632_RS18080	0.15	-0.0
3,416,026	+		LU632_RS18080	0.19	-1.1
3,416,055	+		LU632_RS18080	0.21	-2.0
3,416,055	+		LU632_RS18080	0.21	+0.1
3,416,056	-		LU632_RS18080	0.21	+1.9
3,416,056	-		LU632_RS18080	0.21	+1.7
3,416,056	-		LU632_RS18080	0.21	+0.0
3,416,073	+		LU632_RS18080	0.23	-1.5
3,416,074	-		LU632_RS18080	0.23	+1.6
3,416,128	-		LU632_RS18080	0.27	+3.3
3,416,209	+		LU632_RS18080	0.33	+2.0
3,416,209	+		LU632_RS18080	0.33	-1.3
3,416,210	-		LU632_RS18080	0.33	-1.6
3,416,210	-		LU632_RS18080	0.33	-0.4
3,416,211	+		LU632_RS18080	0.33	+2.8
3,416,211	+		LU632_RS18080	0.33	+1.7
3,416,211	+		LU632_RS18080	0.33	+1.7
3,416,211	+		LU632_RS18080	0.33	-1.4
3,416,212	-		LU632_RS18080	0.33	+0.0
3,416,212	-		LU632_RS18080	0.33	-0.4
3,416,212	-		LU632_RS18080	0.33	-0.3
3,416,212	-		LU632_RS18080	0.33	-0.6
3,416,233	+		LU632_RS18080	0.35	+0.5
3,416,240	+		LU632_RS18080	0.36	-0.0
3,416,340	-		LU632_RS18080	0.43	-0.0
3,416,389	+		LU632_RS18080	0.47	-1.0
3,416,389	+		LU632_RS18080	0.47	-1.1
3,416,391	+		LU632_RS18080	0.47	+0.0
3,416,392	-		LU632_RS18080	0.47	-0.5
3,416,392	-		LU632_RS18080	0.47	+0.6
3,416,392	-		LU632_RS18080	0.47	+0.5
3,416,392	-		LU632_RS18080	0.47	-0.6
3,416,510	+		LU632_RS18080	0.56	+1.0
3,416,588	-		LU632_RS18080	0.62	+0.4
3,416,588	-		LU632_RS18080	0.62	+1.0
3,416,628	-		LU632_RS18080	0.65	-1.8
3,416,652	+		LU632_RS18080	0.67	-2.2
3,416,653	-		LU632_RS18080	0.67	-0.0
3,416,653	-		LU632_RS18080	0.67	+1.2