Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17845

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS17835 and LU632_RS17840 are separated by 14 nucleotidesLU632_RS17840 and LU632_RS17845 are separated by 133 nucleotidesLU632_RS17845 and LU632_RS17850 are separated by 191 nucleotides LU632_RS17835: LU632_RS17835 - MFS transporter, at 3,360,188 to 3,361,402 _RS17835 LU632_RS17840: LU632_RS17840 - MBL fold metallo-hydrolase, at 3,361,417 to 3,362,235 _RS17840 LU632_RS17845: LU632_RS17845 - extracellular solute-binding protein, at 3,362,369 to 3,364,558 _RS17845 LU632_RS17850: LU632_RS17850 - hypothetical protein, at 3,364,750 to 3,368,238 _RS17850 Position (kb) 3362 3363 3364 3365Strain fitness (log2 ratio) -2 -1 0 1 2at 3362.482 kb on - strandat 3362.482 kb on - strandat 3362.788 kb on - strand, within LU632_RS17845at 3362.788 kb on - strand, within LU632_RS17845at 3363.157 kb on + strand, within LU632_RS17845at 3363.185 kb on + strand, within LU632_RS17845at 3363.187 kb on + strand, within LU632_RS17845at 3363.321 kb on - strand, within LU632_RS17845at 3363.652 kb on - strand, within LU632_RS17845at 3363.909 kb on + strand, within LU632_RS17845at 3363.912 kb on + strand, within LU632_RS17845at 3364.121 kb on - strand, within LU632_RS17845at 3364.596 kb on - strandat 3364.746 kb on + strandat 3364.996 kb on - strandat 3365.238 kb on - strand, within LU632_RS17850at 3365.316 kb on + strand, within LU632_RS17850

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
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3,362,482 - +0.6
3,362,482 - -2.7
3,362,788 - LU632_RS17845 0.19 +0.7
3,362,788 - LU632_RS17845 0.19 -0.4
3,363,157 + LU632_RS17845 0.36 -0.1
3,363,185 + LU632_RS17845 0.37 +0.3
3,363,187 + LU632_RS17845 0.37 -2.0
3,363,321 - LU632_RS17845 0.43 +1.6
3,363,652 - LU632_RS17845 0.59 +0.9
3,363,909 + LU632_RS17845 0.70 -0.0
3,363,912 + LU632_RS17845 0.70 -0.7
3,364,121 - LU632_RS17845 0.80 +0.0
3,364,596 - +0.0
3,364,746 + +0.5
3,364,996 - +0.1
3,365,238 - LU632_RS17850 0.14 +0.6
3,365,316 + LU632_RS17850 0.16 +2.0

Or see this region's nucleotide sequence