Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15435

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
2,922,295	-	nadB	LU632_RS15430	0.40	-2.6
2,922,301	-	nadB	LU632_RS15430	0.40	+0.2
2,922,302	+	nadB	LU632_RS15430	0.40	+0.8
2,922,302	+	nadB	LU632_RS15430	0.40	-0.5
2,922,302	+	nadB	LU632_RS15430	0.40	+1.2
2,922,302	+	nadB	LU632_RS15430	0.40	-2.2
2,922,303	-	nadB	LU632_RS15430	0.40	+0.6
2,922,306	-	nadB	LU632_RS15430	0.40	-2.9
2,922,524	+	nadB	LU632_RS15430	0.54	-1.6
2,922,590	+	nadB	LU632_RS15430	0.58	-2.8
2,922,590	+	nadB	LU632_RS15430	0.58	+1.7
2,922,591	-	nadB	LU632_RS15430	0.58	+0.2
2,922,625	-	nadB	LU632_RS15430	0.60	-0.1
2,922,659	+	nadB	LU632_RS15430	0.62	-0.2
2,922,660	-	nadB	LU632_RS15430	0.62	-1.2
2,922,679	-	nadB	LU632_RS15430	0.63	-0.8
2,922,679	-	nadB	LU632_RS15430	0.63	+0.5
2,922,681	-	nadB	LU632_RS15430	0.63	-0.7
2,922,681	-	nadB	LU632_RS15430	0.63	+1.0
2,922,718	+	nadB	LU632_RS15430	0.66	+0.5
2,922,718	+	nadB	LU632_RS15430	0.66	+1.8
2,922,720	+	nadB	LU632_RS15430	0.66	+1.3
2,922,721	-	nadB	LU632_RS15430	0.66	+1.9
2,922,721	-	nadB	LU632_RS15430	0.66	+3.4
2,922,721	-	nadB	LU632_RS15430	0.66	+0.1
2,922,797	-	nadB	LU632_RS15430	0.71	+3.3
2,922,857	+	nadB	LU632_RS15430	0.74	+1.0
2,922,858	-	nadB	LU632_RS15430	0.74	+1.2
2,922,858	-	nadB	LU632_RS15430	0.74	-2.4
2,922,891	-	nadB	LU632_RS15430	0.76	-2.1
2,922,945	+	nadB	LU632_RS15430	0.80	-2.7
2,923,022	-	nadB	LU632_RS15430	0.85	-1.2
2,923,024	+	nadB	LU632_RS15430	0.85	-1.0
2,923,067	-	nadB	LU632_RS15430	0.87	+1.8
2,923,095	+	nadB	LU632_RS15430	0.89	+1.9
2,923,095	+	nadB	LU632_RS15430	0.89	+0.8
2,923,112	+				+0.9
2,923,114	+				+1.3
2,923,164	-				+1.0
2,923,205	+				+1.1
2,923,210	+				+0.8
2,923,210	+				-1.2
2,923,210	+				-2.1
2,923,210	+				-2.7
2,923,210	+				-0.0
2,923,210	+				+1.1
2,923,211	-				+0.8
2,923,211	-				-0.9
2,923,211	-				-0.6
2,923,347	+		LU632_RS15435	0.10	+2.0
2,923,434	+		LU632_RS15435	0.22	+1.1
2,923,438	+		LU632_RS15435	0.23	-0.2
2,923,438	+		LU632_RS15435	0.23	-2.2
2,923,439	-		LU632_RS15435	0.23	+0.7
2,923,439	-		LU632_RS15435	0.23	+1.6
2,923,583	+		LU632_RS15435	0.42	+1.0
2,923,635	-		LU632_RS15435	0.49	-0.1
2,923,653	+		LU632_RS15435	0.52	+4.5
2,923,672	-		LU632_RS15435	0.54	-0.1
2,923,672	-		LU632_RS15435	0.54	-1.3
2,923,672	-		LU632_RS15435	0.54	+0.2
2,923,674	+		LU632_RS15435	0.55	+1.6
2,923,674	+		LU632_RS15435	0.55	-0.2
2,923,674	+		LU632_RS15435	0.55	+1.2
2,923,968	+				-2.3
2,924,009	+				-0.5
2,924,009	+				+0.9
2,924,010	-				-2.1
2,924,010	-				+1.6
2,924,099	+				-2.9
2,924,103	+				-1.6
2,924,103	-				-0.4
2,924,104	-				-2.4
2,924,104	-				+0.9
2,924,111	+				+1.4
2,924,111	+				-0.2
2,924,291	+	srmB	LU632_RS15440	0.11	-0.2
2,924,291	+	srmB	LU632_RS15440	0.11	+1.8
2,924,310	+	srmB	LU632_RS15440	0.13	-1.2
2,924,314	+	srmB	LU632_RS15440	0.13	+0.2
2,924,314	+	srmB	LU632_RS15440	0.13	-0.4
2,924,444	+	srmB	LU632_RS15440	0.23	-1.2
2,924,444	+	srmB	LU632_RS15440	0.23	-2.3
2,924,444	+	srmB	LU632_RS15440	0.23	-2.4
2,924,445	-	srmB	LU632_RS15440	0.23	+0.3
2,924,445	-	srmB	LU632_RS15440	0.23	+0.3
2,924,445	-	srmB	LU632_RS15440	0.23	-2.4
2,924,485	-	srmB	LU632_RS15440	0.26	-0.2
2,924,556	+	srmB	LU632_RS15440	0.32	+1.4
2,924,556	+	srmB	LU632_RS15440	0.32	+1.0
2,924,558	+	srmB	LU632_RS15440	0.32	-3.5
2,924,558	+	srmB	LU632_RS15440	0.32	-2.6
2,924,559	-	srmB	LU632_RS15440	0.32	-2.9
2,924,559	-	srmB	LU632_RS15440	0.32	-1.2
2,924,562	-	srmB	LU632_RS15440	0.32	-1.4
2,924,817	+	srmB	LU632_RS15440	0.51	-2.7
2,924,818	-	srmB	LU632_RS15440	0.51	-0.6
2,924,961	-	srmB	LU632_RS15440	0.62	-2.2
2,924,991	+	srmB	LU632_RS15440	0.64	-1.7
2,924,991	+	srmB	LU632_RS15440	0.64	-1.5