Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14730

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
2,796,508	+				+0.7
2,796,508	+				-2.0
2,796,509	-				+0.2
2,796,567	-				+0.8
2,796,574	-				+0.1
2,796,583	-				-0.9
2,796,596	+				+1.7
2,796,597	-				+3.0
2,796,639	+				-0.6
2,796,640	-				+1.4
2,796,663	+				-0.3
2,796,663	+				-1.9
2,796,664	-				-1.0
2,796,681	+		LU632_RS14715	0.10	+0.7
2,796,890	-				+1.1
2,796,891	+				-1.0
2,796,891	+				-2.3
2,796,892	-				+0.3
2,796,892	-				+2.8
2,796,892	-				-0.4
2,796,892	-				-1.9
2,796,892	-				-0.6
2,796,933	+				+1.1
2,796,933	+				+2.1
2,796,933	+				+0.2
2,796,933	+				+0.0
2,796,934	-				-0.3
2,796,980	-				-0.9
2,797,001	+				+0.7
2,797,002	-				-2.4
2,797,031	+				+2.1
2,797,032	-				-0.9
2,797,074	+		LU632_RS14720	0.32	-0.1
2,797,074	+		LU632_RS14720	0.32	+0.7
2,797,075	-		LU632_RS14720	0.33	-0.3
2,797,078	+		LU632_RS14720	0.35	-0.6
2,797,079	-		LU632_RS14720	0.35	+0.6
2,797,138	-		LU632_RS14720	0.69	-2.9
2,797,181	-				+3.9
2,797,220	+				-0.8
2,797,220	+				-0.3
2,797,220	+				+1.0
2,797,262	+		LU632_RS14725	0.12	-0.3
2,797,275	+		LU632_RS14725	0.19	+1.7
2,797,275	+		LU632_RS14725	0.19	+0.1
2,797,319	+		LU632_RS14725	0.43	+0.2
2,797,421	-				+1.4
2,797,426	+				+1.3
2,797,426	+				+1.1
2,797,426	+				+0.9
2,797,426	+				-0.3
2,797,426	+				+1.4
2,797,426	+				-1.3
2,797,427	-				+1.7
2,797,427	-				-0.9
2,797,427	-				-0.1
2,797,500	+				+0.4
2,797,504	+				+0.8
2,797,504	+				+0.7
2,797,504	+				+1.2
2,797,505	-				+1.3
2,797,505	-				+0.6
2,797,635	+				-0.6
2,797,635	+				+0.1
2,797,765	+				-0.3
2,797,803	-				+1.7
2,797,803	-				-0.9
2,797,803	-				-2.4
2,797,835	-				+1.4
2,797,926	+	mfd	LU632_RS14730	0.12	+0.1
2,797,927	-	mfd	LU632_RS14730	0.12	+0.3
2,797,988	+	mfd	LU632_RS14730	0.14	+1.5
2,797,989	-	mfd	LU632_RS14730	0.14	+1.7
2,798,164	+	mfd	LU632_RS14730	0.19	-2.3
2,798,164	+	mfd	LU632_RS14730	0.19	-0.0
2,798,164	+	mfd	LU632_RS14730	0.19	+0.6
2,798,165	-	mfd	LU632_RS14730	0.19	-3.7
2,798,233	+	mfd	LU632_RS14730	0.21	-0.1
2,798,233	+	mfd	LU632_RS14730	0.21	+0.1
2,798,233	+	mfd	LU632_RS14730	0.21	-0.6
2,798,234	-	mfd	LU632_RS14730	0.21	+1.5
2,798,234	-	mfd	LU632_RS14730	0.21	-2.9
2,798,234	-	mfd	LU632_RS14730	0.21	+0.6
2,798,236	-	mfd	LU632_RS14730	0.21	+0.2
2,798,237	+	mfd	LU632_RS14730	0.21	+0.5
2,798,328	-	mfd	LU632_RS14730	0.24	-0.9
2,798,459	-	mfd	LU632_RS14730	0.28	+0.9
2,798,514	+	mfd	LU632_RS14730	0.29	-3.6
2,798,521	+	mfd	LU632_RS14730	0.30	-0.3
2,798,554	+	mfd	LU632_RS14730	0.30	-0.9
2,798,606	-	mfd	LU632_RS14730	0.32	+1.0
2,798,719	+	mfd	LU632_RS14730	0.35	-0.0
2,798,731	+	mfd	LU632_RS14730	0.36	-1.6
2,798,851	-	mfd	LU632_RS14730	0.39	+0.7
2,799,027	-	mfd	LU632_RS14730	0.44	-2.4
2,799,027	-	mfd	LU632_RS14730	0.44	+1.8
2,799,041	+	mfd	LU632_RS14730	0.45	+2.5
2,799,063	-	mfd	LU632_RS14730	0.45	+0.7
2,799,082	-	mfd	LU632_RS14730	0.46	+1.7
2,799,099	-	mfd	LU632_RS14730	0.46	+0.3
2,799,150	+	mfd	LU632_RS14730	0.48	+0.4
2,799,151	-	mfd	LU632_RS14730	0.48	-0.3
2,799,151	-	mfd	LU632_RS14730	0.48	+0.5
2,799,151	-	mfd	LU632_RS14730	0.48	+0.7
2,799,215	-	mfd	LU632_RS14730	0.50	-2.0
2,799,215	-	mfd	LU632_RS14730	0.50	+0.7
2,799,218	+	mfd	LU632_RS14730	0.50	+0.7
2,799,451	+	mfd	LU632_RS14730	0.57	+1.7
2,799,452	-	mfd	LU632_RS14730	0.57	-0.2
2,799,501	-	mfd	LU632_RS14730	0.58	+0.7
2,799,611	-	mfd	LU632_RS14730	0.61	+0.8
2,799,624	+	mfd	LU632_RS14730	0.62	-1.3
2,799,624	+	mfd	LU632_RS14730	0.62	+1.1
2,799,796	+	mfd	LU632_RS14730	0.67	-0.3
2,799,922	-	mfd	LU632_RS14730	0.70	-0.7
2,799,944	+	mfd	LU632_RS14730	0.71	+1.1
2,799,944	+	mfd	LU632_RS14730	0.71	-1.3
2,799,944	+	mfd	LU632_RS14730	0.71	-0.0
2,799,951	-	mfd	LU632_RS14730	0.71	-1.7
2,799,951	-	mfd	LU632_RS14730	0.71	-0.3
2,799,951	-	mfd	LU632_RS14730	0.71	+0.7
2,800,133	-	mfd	LU632_RS14730	0.76	-0.5
2,800,154	-	mfd	LU632_RS14730	0.77	+0.7
2,800,250	-	mfd	LU632_RS14730	0.80	+2.3
2,800,427	+	mfd	LU632_RS14730	0.85	+0.5
2,800,428	-	mfd	LU632_RS14730	0.85	+2.2
2,800,429	+	mfd	LU632_RS14730	0.85	+4.6
2,800,956	-				+1.1
2,800,992	+				+1.6
2,801,037	+				-1.2
2,801,100	-				-1.1
2,801,109	+				-0.6
2,801,235	-				-0.9
2,801,235	-				-3.0
2,801,248	+				-2.3
2,801,270	+				-1.1
2,801,272	+				-0.9
2,801,272	+				+0.5
2,801,274	+				+1.3
2,801,275	-				-1.9
2,801,280	+				+0.1
2,801,281	-				-2.2
2,801,282	+				-1.0
2,801,282	+				+0.3
2,801,283	-				-2.2
2,801,299	-				-0.9
2,801,322	-				-0.3
2,801,364	+				+0.3
2,801,365	-				+0.3
2,801,365	-				+0.8
2,801,454	-				-0.3
2,801,537	+				+1.1
2,801,709	+		LU632_RS14735	0.32	-1.3
2,801,710	-		LU632_RS14735	0.32	-0.3
2,801,711	+		LU632_RS14735	0.32	-3.5
2,801,711	+		LU632_RS14735	0.32	-1.9
2,801,712	-		LU632_RS14735	0.33	-3.2
2,801,712	-		LU632_RS14735	0.33	-2.4
2,801,715	+		LU632_RS14735	0.33	-3.5
2,801,934	+		LU632_RS14735	0.74	-3.5