Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14600

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
2,775,536	+	phoQ	LU632_RS14595	0.40	-0.9
2,775,536	+	phoQ	LU632_RS14595	0.40	+0.8
2,775,536	+	phoQ	LU632_RS14595	0.40	+0.8
2,775,537	-	phoQ	LU632_RS14595	0.40	-0.6
2,775,537	-	phoQ	LU632_RS14595	0.40	-2.0
2,775,540	+	phoQ	LU632_RS14595	0.40	-0.9
2,775,540	+	phoQ	LU632_RS14595	0.40	+0.8
2,775,541	-	phoQ	LU632_RS14595	0.40	-2.2
2,775,714	-	phoQ	LU632_RS14595	0.52	+0.3
2,775,854	-	phoQ	LU632_RS14595	0.61	-0.2
2,775,887	+	phoQ	LU632_RS14595	0.64	-0.2
2,775,915	+	phoQ	LU632_RS14595	0.66	+0.2
2,775,915	+	phoQ	LU632_RS14595	0.66	-0.2
2,775,915	+	phoQ	LU632_RS14595	0.66	-1.8
2,775,916	-	phoQ	LU632_RS14595	0.66	-1.0
2,775,916	-	phoQ	LU632_RS14595	0.66	-1.1
2,775,916	-	phoQ	LU632_RS14595	0.66	-0.2
2,775,916	-	phoQ	LU632_RS14595	0.66	-3.1
2,776,014	-	phoQ	LU632_RS14595	0.72	+0.2
2,776,131	-	phoQ	LU632_RS14595	0.80	-0.8
2,776,131	-	phoQ	LU632_RS14595	0.80	+1.0
2,776,131	-	phoQ	LU632_RS14595	0.80	+2.0
2,776,190	+	phoQ	LU632_RS14595	0.84	-2.0
2,776,191	-	phoQ	LU632_RS14595	0.84	-0.4
2,776,323	+				-1.8
2,776,323	+				-1.6
2,776,326	-				+0.4
2,776,338	-				-0.2
2,776,441	+				+0.4
2,776,441	+				-0.2
2,776,442	-				+0.6
2,776,531	-				+0.2
2,776,531	-				+0.8
2,776,611	+				-0.2
2,776,741	-		LU632_RS14600	0.20	+0.4
2,776,894	+		LU632_RS14600	0.34	-2.9
2,776,894	+		LU632_RS14600	0.34	+1.9
2,776,894	+		LU632_RS14600	0.34	+1.4
2,776,901	+		LU632_RS14600	0.35	-0.6
2,776,901	+		LU632_RS14600	0.35	+0.4
2,776,901	+		LU632_RS14600	0.35	-2.2
2,776,901	+		LU632_RS14600	0.35	-0.5
2,776,901	+		LU632_RS14600	0.35	+1.6
2,776,901	+		LU632_RS14600	0.35	+0.8
2,776,902	-		LU632_RS14600	0.35	-2.9
2,776,902	-		LU632_RS14600	0.35	-1.2
2,776,902	-		LU632_RS14600	0.35	-0.3
2,776,905	+		LU632_RS14600	0.35	-2.0
2,776,906	-		LU632_RS14600	0.35	-0.0
2,776,995	-		LU632_RS14600	0.43	+0.9
2,777,138	+		LU632_RS14600	0.56	-0.2
2,777,139	-		LU632_RS14600	0.56	-1.8
2,777,158	+		LU632_RS14600	0.57	+0.8
2,777,159	-		LU632_RS14600	0.58	-1.0
2,777,322	+		LU632_RS14600	0.72	-0.6
2,777,389	+		LU632_RS14600	0.78	-0.8
2,777,520	+		LU632_RS14600	0.90	-0.8
2,777,521	-		LU632_RS14600	0.90	-1.5
2,777,523	+		LU632_RS14600	0.90	-2.0
2,777,617	+				-0.8
2,777,618	-				-0.8
2,777,635	+				+1.2
2,777,717	-				+1.2
2,777,775	+				-2.7
2,777,840	+				+0.1
2,777,840	+				-0.2
2,777,840	+				-2.0
2,777,841	-				-1.0
2,777,847	-				-2.9
2,777,847	-				-0.0
2,777,847	-				+1.0
2,777,927	-	pepT	LU632_RS14605	0.15	-2.0
2,777,927	-	pepT	LU632_RS14605	0.15	-0.8
2,778,018	-	pepT	LU632_RS14605	0.23	+0.2
2,778,141	+	pepT	LU632_RS14605	0.33	-3.2
2,778,141	+	pepT	LU632_RS14605	0.33	-2.2
2,778,142	-	pepT	LU632_RS14605	0.33	+0.4
2,778,142	-	pepT	LU632_RS14605	0.33	-0.1
2,778,142	-	pepT	LU632_RS14605	0.33	+0.8
2,778,142	-	pepT	LU632_RS14605	0.33	+1.3
2,778,142	-	pepT	LU632_RS14605	0.33	-0.1
2,778,142	-	pepT	LU632_RS14605	0.33	-0.8
2,778,142	-	pepT	LU632_RS14605	0.33	-1.9
2,778,142	-	pepT	LU632_RS14605	0.33	+0.8
2,778,143	+	pepT	LU632_RS14605	0.33	-1.2
2,778,144	-	pepT	LU632_RS14605	0.33	+0.8
2,778,144	-	pepT	LU632_RS14605	0.33	+0.4
2,778,144	-	pepT	LU632_RS14605	0.33	+0.9
2,778,144	-	pepT	LU632_RS14605	0.33	+0.5
2,778,144	-	pepT	LU632_RS14605	0.33	-0.6
2,778,144	-	pepT	LU632_RS14605	0.33	-0.4
2,778,144	-	pepT	LU632_RS14605	0.33	+0.6
2,778,144	-	pepT	LU632_RS14605	0.33	-0.0
2,778,148	-	pepT	LU632_RS14605	0.33	+1.4
2,778,192	-	pepT	LU632_RS14605	0.37	+0.7
2,778,192	-	pepT	LU632_RS14605	0.37	-0.0
2,778,283	-	pepT	LU632_RS14605	0.44	+3.1
2,778,328	+	pepT	LU632_RS14605	0.48	+0.2
2,778,349	-	pepT	LU632_RS14605	0.50	-2.8
2,778,395	+	pepT	LU632_RS14605	0.53	-0.6
2,778,449	-	pepT	LU632_RS14605	0.58	-0.5
2,778,474	+	pepT	LU632_RS14605	0.60	+0.3
2,778,481	-	pepT	LU632_RS14605	0.60	+0.1
2,778,496	-	pepT	LU632_RS14605	0.61	+1.8
2,778,594	+	pepT	LU632_RS14605	0.69	-0.2
2,778,594	+	pepT	LU632_RS14605	0.69	+3.4
2,778,595	-	pepT	LU632_RS14605	0.69	+0.1