Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13300

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
2,536,740	+				-0.0
2,536,767	+				-1.9
2,536,767	+				+0.1
2,536,768	-				+0.5
2,536,874	+				-3.5
2,536,874	+				-0.3
2,536,992	-	copD	LU632_RS13295	0.22	+1.0
2,536,993	+	copD	LU632_RS13295	0.22	-1.1
2,537,029	-	copD	LU632_RS13295	0.26	-1.9
2,537,076	-	copD	LU632_RS13295	0.32	+3.7
2,537,109	+	copD	LU632_RS13295	0.36	+0.6
2,537,158	-	copD	LU632_RS13295	0.41	+3.5
2,537,205	+	copD	LU632_RS13295	0.47	-1.1
2,537,205	+	copD	LU632_RS13295	0.47	+0.5
2,537,268	+	copD	LU632_RS13295	0.54	-0.9
2,537,468	+	copD	LU632_RS13295	0.77	+0.7
2,537,468	+	copD	LU632_RS13295	0.77	+2.3
2,537,469	-	copD	LU632_RS13295	0.77	-1.5
2,537,469	-	copD	LU632_RS13295	0.77	-1.2
2,537,532	-	copD	LU632_RS13295	0.84	-0.3
2,537,532	-	copD	LU632_RS13295	0.84	-2.6
2,537,592	-				+0.4
2,537,592	-				-1.3
2,537,595	-				+2.8
2,537,595	-				-0.7
2,537,595	-				-1.3
2,537,602	-				+0.6
2,537,647	+				+0.7
2,537,648	-				-0.4
2,537,648	-				-0.3
2,537,667	-				-3.0
2,537,674	-				-2.3
2,537,687	+				+1.3
2,537,688	-				-1.7
2,537,704	-				+0.2
2,537,742	-	yobA	LU632_RS13300	0.20	-0.1
2,537,787	+	yobA	LU632_RS13300	0.32	-1.6
2,537,875	+	yobA	LU632_RS13300	0.56	-2.1
2,537,875	+	yobA	LU632_RS13300	0.56	+0.3
2,537,875	+	yobA	LU632_RS13300	0.56	-1.5
2,537,875	+	yobA	LU632_RS13300	0.56	+0.4
2,537,875	+	yobA	LU632_RS13300	0.56	-0.9
2,537,876	-	yobA	LU632_RS13300	0.56	-0.9
2,537,876	-	yobA	LU632_RS13300	0.56	-0.3
2,537,876	-	yobA	LU632_RS13300	0.56	-1.0
2,537,876	-	yobA	LU632_RS13300	0.56	-3.5
2,538,027	+				+2.2
2,538,102	-				-0.9
2,538,155	+				-0.3
2,538,156	-				-0.6
2,538,156	-				+0.2
2,538,171	-				-2.5
2,538,198	-				+0.7
2,538,198	-				+0.4
2,538,209	-				+1.2
2,538,291	-		LU632_RS13305	0.39	+0.1
2,538,295	+		LU632_RS13305	0.41	-1.4
2,538,296	-		LU632_RS13305	0.42	-0.9
2,538,296	-		LU632_RS13305	0.42	-0.6
2,538,429	-				+2.7
2,538,447	+				-1.2
2,538,447	+				-0.1
2,538,457	+				-2.8
2,538,457	+				+1.0
2,538,482	+				-0.3
2,538,625	+		LU632_RS13310	0.14	-0.6
2,538,699	+		LU632_RS13310	0.24	+4.7
2,538,699	+		LU632_RS13310	0.24	-0.9
2,538,851	-		LU632_RS13310	0.44	+0.7
2,538,926	-		LU632_RS13310	0.54	+0.7
2,538,965	+		LU632_RS13310	0.59	+1.7
2,538,966	-		LU632_RS13310	0.59	-2.6
2,539,001	+		LU632_RS13310	0.64	+0.1