Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12775

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
2,431,158	-	trpB	LU632_RS12770	0.19	-2.1
2,431,329	+	trpB	LU632_RS12770	0.33	+2.4
2,431,329	+	trpB	LU632_RS12770	0.33	+1.4
2,431,329	+	trpB	LU632_RS12770	0.33	-0.2
2,431,369	+	trpB	LU632_RS12770	0.36	+2.9
2,431,488	+	trpB	LU632_RS12770	0.46	+0.4
2,431,488	+	trpB	LU632_RS12770	0.46	-0.0
2,431,488	+	trpB	LU632_RS12770	0.46	-1.6
2,431,488	+	trpB	LU632_RS12770	0.46	-1.6
2,431,488	+	trpB	LU632_RS12770	0.46	-1.3
2,431,489	-	trpB	LU632_RS12770	0.46	+0.1
2,431,489	-	trpB	LU632_RS12770	0.46	-0.3
2,431,489	-	trpB	LU632_RS12770	0.46	+5.1
2,431,489	-	trpB	LU632_RS12770	0.46	-0.8
2,431,489	-	trpB	LU632_RS12770	0.46	+1.5
2,431,490	+	trpB	LU632_RS12770	0.47	+0.1
2,431,491	-	trpB	LU632_RS12770	0.47	+0.9
2,431,491	-	trpB	LU632_RS12770	0.47	+0.9
2,431,716	-	trpB	LU632_RS12770	0.65	-0.8
2,431,763	+	trpB	LU632_RS12770	0.69	-2.6
2,431,767	+	trpB	LU632_RS12770	0.70	+0.1
2,431,767	+	trpB	LU632_RS12770	0.70	-1.9
2,431,768	-	trpB	LU632_RS12770	0.70	-1.8
2,431,768	-	trpB	LU632_RS12770	0.70	+0.2
2,431,824	+	trpB	LU632_RS12770	0.75	-0.5
2,431,824	+	trpB	LU632_RS12770	0.75	-3.2
2,431,824	+	trpB	LU632_RS12770	0.75	+0.7
2,431,881	-	trpB	LU632_RS12770	0.79	+0.6
2,431,903	-	trpB	LU632_RS12770	0.81	-0.9
2,431,903	-	trpB	LU632_RS12770	0.81	-1.9
2,432,050	+				+2.0
2,432,081	+				-2.8
2,432,082	-				-1.6
2,432,082	-				+0.1
2,432,082	-				-0.2
2,432,083	+				-0.1
2,432,083	+				-0.3
2,432,083	+				-0.4
2,432,083	+				-2.1
2,432,083	+				-1.6
2,432,083	+				-0.9
2,432,084	-				-0.3
2,432,084	-				+2.3
2,432,122	+				+1.7
2,432,122	+				+1.5
2,432,123	-				-3.0
2,432,135	+				-0.3
2,432,137	+				+0.3
2,432,145	+				-1.9
2,432,247	+	trpA	LU632_RS12775	0.15	-2.6
2,432,247	+	trpA	LU632_RS12775	0.15	-0.3
2,432,280	+	trpA	LU632_RS12775	0.19	-1.5
2,432,280	+	trpA	LU632_RS12775	0.19	-0.1
2,432,281	-	trpA	LU632_RS12775	0.19	-0.9
2,432,396	-	trpA	LU632_RS12775	0.33	+0.1
2,432,430	-	trpA	LU632_RS12775	0.38	-2.1
2,432,430	-	trpA	LU632_RS12775	0.38	+1.2
2,432,430	-	trpA	LU632_RS12775	0.38	-0.9
2,432,430	-	trpA	LU632_RS12775	0.38	-3.0
2,432,430	-	trpA	LU632_RS12775	0.38	+0.4
2,432,430	-	trpA	LU632_RS12775	0.38	-0.3
2,432,430	-	trpA	LU632_RS12775	0.38	-0.9
2,432,644	+	trpA	LU632_RS12775	0.64	+1.7
2,432,644	+	trpA	LU632_RS12775	0.64	-1.3
2,432,645	-	trpA	LU632_RS12775	0.64	-0.3
2,432,645	-	trpA	LU632_RS12775	0.64	-0.0
2,432,649	-	trpA	LU632_RS12775	0.65	-1.0
2,432,736	+	trpA	LU632_RS12775	0.76	-0.8
2,433,032	+				-2.6
2,433,076	-				+0.3
2,433,077	-				-0.0
2,433,116	+				+0.7
2,433,116	+				-0.9
2,433,192	+		LU632_RS12780	0.32	-1.6
2,433,192	+		LU632_RS12780	0.32	-3.3
2,433,212	+		LU632_RS12780	0.39	+1.0
2,433,381	-				+0.2
2,433,461	+				+0.7
2,433,527	+				+0.5
2,433,528	-				-1.3
2,433,576	+				-1.6
2,433,580	+				-0.1
2,433,589	+				-0.3
2,433,615	-				-0.6
2,433,671	-				-0.6
2,433,674	+				+2.7
2,433,675	-				-1.5
2,433,675	-				-0.3
2,433,768	-				-0.6
2,433,771	-				+1.2
2,433,793	-				-1.3
2,433,806	+				-0.1
2,433,806	+				-2.9
2,433,806	+				+1.1
2,433,807	-				-2.5
2,433,857	+				-2.9
2,433,858	-				+0.6
2,433,858	-				+2.3