Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12200

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
2,314,710	+		LU632_RS12195	0.78	-0.3
2,314,714	+		LU632_RS12195	0.78	-1.0
2,314,715	-		LU632_RS12195	0.78	+1.2
2,314,759	-		LU632_RS12195	0.80	-0.6
2,314,945	+		LU632_RS12195	0.86	-3.0
2,314,946	-		LU632_RS12195	0.86	-0.0
2,315,125	+				-1.3
2,315,125	+				+1.1
2,315,126	-				-2.1
2,315,147	+				+0.1
2,315,147	+				+0.0
2,315,148	-				+0.7
2,315,259	-				-0.7
2,315,259	-				-1.9
2,315,259	-				-0.4
2,315,259	-				+0.2
2,315,261	-				+0.6
2,315,317	+				+1.3
2,315,318	-				+0.6
2,315,417	-				+0.6
2,315,475	-				+0.4
2,315,480	+				+0.4
2,315,503	+				-3.2
2,315,504	-				-1.3
2,315,504	-				-1.9
2,315,504	-				+0.5
2,315,557	-				-2.8
2,315,632	+				+0.7
2,315,632	+				+0.1
2,315,635	+				+1.3
2,315,635	+				-0.9
2,315,643	+				+0.3
2,315,643	+				+0.7
2,315,644	-				-1.7
2,315,658	+				-1.7
2,315,704	-		LU632_RS12200	0.22	-2.0
2,315,805	-		LU632_RS12200	0.63	-2.3
2,315,922	-				+0.7
2,315,933	+				+1.3
2,315,933	+				+1.7
2,315,933	+				-0.9
2,315,934	-				-3.5
2,315,972	-				+0.4
2,315,989	-				-0.7
2,316,016	+				+0.3
2,316,016	+				+0.5
2,316,071	+		LU632_RS12205	0.11	+1.2
2,316,156	-		LU632_RS12205	0.18	-0.4
2,316,156	-		LU632_RS12205	0.18	-0.8
2,316,162	-		LU632_RS12205	0.18	+0.4
2,316,166	+		LU632_RS12205	0.19	-1.8
2,316,167	-		LU632_RS12205	0.19	-2.9
2,316,232	-		LU632_RS12205	0.24	+0.9
2,316,232	-		LU632_RS12205	0.24	+2.0
2,316,319	+		LU632_RS12205	0.30	-2.7
2,316,352	-		LU632_RS12205	0.33	+0.1
2,316,352	-		LU632_RS12205	0.33	-1.7
2,316,376	+		LU632_RS12205	0.35	+0.2
2,316,377	-		LU632_RS12205	0.35	+1.3
2,316,473	-		LU632_RS12205	0.42	-0.4
2,316,473	-		LU632_RS12205	0.42	-2.5
2,316,556	+		LU632_RS12205	0.49	-0.1
2,316,557	-		LU632_RS12205	0.49	+0.6
2,316,567	+		LU632_RS12205	0.50	+0.2
2,316,601	+		LU632_RS12205	0.52	-0.1
2,316,601	+		LU632_RS12205	0.52	+1.1
2,316,602	-		LU632_RS12205	0.52	-0.5
2,316,605	-		LU632_RS12205	0.53	+0.7
2,316,675	+		LU632_RS12205	0.58	+0.1
2,316,676	-		LU632_RS12205	0.58	+0.6
2,316,678	+		LU632_RS12205	0.58	-0.6
2,316,679	-		LU632_RS12205	0.58	-0.7
2,316,812	+		LU632_RS12205	0.69	+1.2