Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11795

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
2,239,771	-		LU632_RS11785	0.23	+0.1
2,239,771	-		LU632_RS11785	0.23	+0.9
2,239,772	+		LU632_RS11785	0.24	+0.1
2,239,773	-		LU632_RS11785	0.24	+0.0
2,239,776	+		LU632_RS11785	0.25	-0.4
2,239,777	-		LU632_RS11785	0.25	+0.1
2,239,777	-		LU632_RS11785	0.25	-0.5
2,239,790	+		LU632_RS11785	0.30	-0.5
2,239,838	+		LU632_RS11785	0.47	-0.3
2,239,974	-				+1.1
2,239,983	+				-1.8
2,239,984	-				-4.4
2,239,991	-				-1.9
2,240,001	+				-3.7
2,240,006	-				-0.5
2,240,006	-				-1.5
2,240,010	-				+0.4
2,240,033	+				-3.5
2,240,046	-		LU632_RS11790	0.11	-1.3
2,240,274	+		LU632_RS11790	0.50	+0.2
2,240,511	+				-1.0
2,240,512	-				+0.8
2,240,532	+				+1.4
2,240,660	+				+0.6
2,240,661	-				+1.3
2,240,696	+				+2.1
2,240,856	+		LU632_RS11795	0.21	+0.7
2,240,871	+		LU632_RS11795	0.22	-0.6
2,240,872	-		LU632_RS11795	0.22	-0.7
2,240,895	-		LU632_RS11795	0.24	-3.2
2,240,977	+		LU632_RS11795	0.29	+0.7
2,240,978	-		LU632_RS11795	0.29	+2.5
2,241,177	+		LU632_RS11795	0.43	-0.9
2,241,178	-		LU632_RS11795	0.44	-1.9
2,241,178	-		LU632_RS11795	0.44	-2.8
2,241,178	-		LU632_RS11795	0.44	+0.6
2,241,573	+		LU632_RS11795	0.71	-0.3
2,241,663	+		LU632_RS11795	0.78	+0.7
2,241,663	+		LU632_RS11795	0.78	-1.1
2,241,666	-		LU632_RS11795	0.78	+1.3
2,241,685	-		LU632_RS11795	0.79	+2.6
2,241,920	+				+1.0
2,241,921	-				-0.5
2,242,047	+		LU632_RS11800	0.13	+0.1
2,242,047	+		LU632_RS11800	0.13	+2.3
2,242,047	+		LU632_RS11800	0.13	+1.3
2,242,047	+		LU632_RS11800	0.13	-1.1
2,242,047	+		LU632_RS11800	0.13	+0.7
2,242,048	-		LU632_RS11800	0.13	-1.5
2,242,051	+		LU632_RS11800	0.14	-1.2
2,242,051	+		LU632_RS11800	0.14	+1.5
2,242,125	+		LU632_RS11800	0.23	-0.3
2,242,126	-		LU632_RS11800	0.23	+2.2
2,242,126	-		LU632_RS11800	0.23	-1.2
2,242,190	-		LU632_RS11800	0.31	+0.6
2,242,387	+		LU632_RS11800	0.55	-2.1
2,242,387	+		LU632_RS11800	0.55	+0.7
2,242,519	+		LU632_RS11800	0.71	+0.2
2,242,627	-		LU632_RS11800	0.84	+1.7
2,242,912	+				+1.3
2,242,913	-				-0.4
2,242,961	+	terL	LU632_RS11805	0.12	+0.8
2,242,961	+	terL	LU632_RS11805	0.12	+3.5
2,242,961	+	terL	LU632_RS11805	0.12	-0.5
2,242,962	-	terL	LU632_RS11805	0.12	+2.3