Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10850

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
2,069,437	-	osmE	LU632_RS10840	0.52	-1.3
2,069,440	-	osmE	LU632_RS10840	0.53	+0.7
2,069,470	+	osmE	LU632_RS10840	0.62	-3.8
2,069,471	-	osmE	LU632_RS10840	0.62	-0.9
2,069,474	+	osmE	LU632_RS10840	0.63	+1.6
2,069,474	+	osmE	LU632_RS10840	0.63	-0.3
2,069,475	-	osmE	LU632_RS10840	0.63	+1.2
2,069,475	-	osmE	LU632_RS10840	0.63	+1.7
2,069,475	-	osmE	LU632_RS10840	0.63	+1.0
2,069,478	-	osmE	LU632_RS10840	0.64	+0.7
2,069,478	-	osmE	LU632_RS10840	0.64	-2.0
2,069,478	-	osmE	LU632_RS10840	0.64	+1.3
2,069,494	-	osmE	LU632_RS10840	0.69	+0.5
2,069,506	+	osmE	LU632_RS10840	0.72	-3.1
2,069,518	+	osmE	LU632_RS10840	0.76	-1.9
2,069,518	+	osmE	LU632_RS10840	0.76	-0.4
2,069,519	-	osmE	LU632_RS10840	0.76	-1.9
2,069,520	+	osmE	LU632_RS10840	0.76	-3.5
2,069,545	+	osmE	LU632_RS10840	0.84	+0.2
2,069,600	-				-1.3
2,069,600	-				+3.6
2,069,600	-				-1.1
2,069,600	-				+2.9
2,069,660	+				+0.6
2,069,809	+				-0.2
2,069,810	-				-0.4
2,069,810	-				-2.7
2,069,810	-				+0.8
2,069,811	+				+2.1
2,069,811	+				-1.4
2,069,812	-				+0.9
2,069,847	-				-2.3
2,069,860	-		LU632_RS10845	0.12	-0.4
2,069,875	+		LU632_RS10845	0.16	-2.1
2,069,876	-		LU632_RS10845	0.16	+1.0
2,069,876	-		LU632_RS10845	0.16	-1.0
2,069,893	+		LU632_RS10845	0.20	+1.2
2,069,968	+		LU632_RS10845	0.40	+0.4
2,069,968	+		LU632_RS10845	0.40	+3.0
2,069,969	-		LU632_RS10845	0.41	+0.9
2,069,973	-		LU632_RS10845	0.42	+0.9
2,069,993	-		LU632_RS10845	0.47	+1.5
2,069,993	-		LU632_RS10845	0.47	+0.0
2,069,995	+		LU632_RS10845	0.48	+2.0
2,069,996	-		LU632_RS10845	0.48	+1.1
2,069,996	-		LU632_RS10845	0.48	-0.2
2,069,996	-		LU632_RS10845	0.48	+0.1
2,069,996	-		LU632_RS10845	0.48	-0.5
2,070,013	+		LU632_RS10845	0.53	+0.7
2,070,014	-		LU632_RS10845	0.53	-0.9
2,070,017	-		LU632_RS10845	0.54	-0.4
2,070,061	-		LU632_RS10845	0.65	-0.1
2,070,151	+		LU632_RS10845	0.90	+0.6
2,070,172	-				-0.9
2,070,176	-				-1.2
2,070,278	+				-2.0
2,070,279	-				+0.7
2,070,284	+				-0.3
2,070,284	+				-2.7
2,070,377	-				-0.3
2,070,386	+				-1.0
2,070,386	+				+2.2
2,070,387	-				+1.2
2,070,575	-		LU632_RS10850	0.17	+0.7
2,070,593	-		LU632_RS10850	0.19	-1.3
2,070,593	-		LU632_RS10850	0.19	-1.3
2,070,593	-		LU632_RS10850	0.19	-2.3
2,070,725	+		LU632_RS10850	0.30	+1.9
2,070,737	-		LU632_RS10850	0.31	+1.1
2,070,761	+		LU632_RS10850	0.33	-2.3
2,070,762	-		LU632_RS10850	0.33	-1.3
2,070,762	-		LU632_RS10850	0.33	-1.9
2,070,801	+		LU632_RS10850	0.37	-3.2
2,070,873	+		LU632_RS10850	0.43	+0.6
2,070,874	-		LU632_RS10850	0.43	-1.6
2,070,874	-		LU632_RS10850	0.43	-1.1
2,071,111	+		LU632_RS10850	0.63	+0.3
2,071,128	+		LU632_RS10850	0.65	-0.4
2,071,131	+		LU632_RS10850	0.65	-0.5
2,071,132	-		LU632_RS10850	0.65	+0.7
2,071,261	+		LU632_RS10850	0.76	+0.1
2,071,306	+		LU632_RS10850	0.80	-2.1
2,071,308	+		LU632_RS10850	0.80	+0.0
2,071,308	+		LU632_RS10850	0.80	-0.3
2,071,308	+		LU632_RS10850	0.80	+1.4
2,071,309	-		LU632_RS10850	0.80	-1.1
2,071,309	-		LU632_RS10850	0.80	-1.1
2,071,571	+				+0.5
2,071,572	-				-2.6
2,071,572	-				+0.2
2,071,608	+				-1.9
2,071,610	+				-0.7
2,071,610	+				-1.9
2,071,610	+				-0.1
2,071,629	-				-1.7
2,071,698	+				-2.3
2,071,698	+				+1.0
2,071,699	-				-0.2
2,071,707	-				-0.9
2,071,711	+				+0.9
2,071,770	+				-0.9
2,071,825	+				-1.9
2,071,850	+				+1.8
2,072,022	+		LU632_RS10855	0.22	+1.6
2,072,023	-		LU632_RS10855	0.22	+1.2
2,072,061	+		LU632_RS10855	0.25	-0.3
2,072,067	-		LU632_RS10855	0.25	-4.0
2,072,232	+		LU632_RS10855	0.37	-2.9
2,072,295	+		LU632_RS10855	0.41	-0.0
2,072,313	-		LU632_RS10855	0.43	-2.3
2,072,393	-		LU632_RS10855	0.48	+0.8
2,072,425	+		LU632_RS10855	0.51	-0.5
2,072,453	-		LU632_RS10855	0.53	+4.3
2,072,491	-		LU632_RS10855	0.55	+1.0