Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09700

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
1,837,230	+				+3.0
1,837,231	-				+5.6
1,837,243	-				-1.9
1,837,243	-				-3.4
1,837,245	-				-0.2
1,837,284	-				-0.7
1,837,336	-				-0.6
1,837,345	+				+0.1
1,837,349	+				-0.1
1,837,350	-				-0.8
1,837,358	-				-2.9
1,837,401	+				+0.2
1,837,414	-				+0.9
1,837,414	-				-1.7
1,837,458	-				+0.9
1,837,458	-				+0.8
1,837,481	-				-3.1
1,837,481	-				-2.1
1,837,498	-				-1.4
1,837,518	+				-2.7
1,837,731	+		LU632_RS09695	0.51	-0.3
1,837,821	-				+0.2
1,837,821	-				+1.1
1,837,826	+				-0.1
1,837,838	+				-2.1
1,837,938	+				-0.8
1,838,011	+				-3.2
1,838,051	+				+0.9
1,838,087	+				-0.8
1,838,087	+				-1.5
1,838,088	-				+2.5
1,838,160	+				-1.7
1,838,272	-	clpS	LU632_RS09700	0.35	-2.0
1,838,297	+	clpS	LU632_RS09700	0.42	-1.9
1,838,423	+	clpS	LU632_RS09700	0.82	-0.7
1,838,424	-	clpS	LU632_RS09700	0.82	+0.9
1,838,424	-	clpS	LU632_RS09700	0.82	-0.7
1,838,428	-	clpS	LU632_RS09700	0.83	-1.7
1,838,428	-	clpS	LU632_RS09700	0.83	-1.1
1,838,432	-	clpS	LU632_RS09700	0.84	-1.1
1,838,463	+				-1.8
1,838,464	-				-1.9
1,838,493	+				-1.7
1,838,494	-				-1.2
1,838,509	+				-2.7
1,838,509	+				-1.1
1,838,538	+				-0.7
1,838,599	-				-2.5
1,838,599	-				-1.7
1,838,618	-				+0.2
1,838,843	-	clpA	LU632_RS09705	0.15	-1.1
1,838,874	-	clpA	LU632_RS09705	0.16	-1.5
1,838,877	+	clpA	LU632_RS09705	0.16	+0.7
1,838,878	-	clpA	LU632_RS09705	0.16	+1.6
1,838,884	+	clpA	LU632_RS09705	0.16	-2.1
1,838,889	-	clpA	LU632_RS09705	0.17	-3.2
1,839,109	-	clpA	LU632_RS09705	0.26	-3.1
1,839,238	+	clpA	LU632_RS09705	0.32	-1.5
1,839,239	-	clpA	LU632_RS09705	0.32	-1.7
1,839,243	-	clpA	LU632_RS09705	0.32	-0.7
1,839,243	-	clpA	LU632_RS09705	0.32	-3.5
1,839,281	+	clpA	LU632_RS09705	0.34	-1.1
1,839,477	-	clpA	LU632_RS09705	0.42	-1.1