Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS09345 and LU632_RS09350 are separated by 136 nucleotides LU632_RS09350 and LU632_RS09355 are separated by 81 nucleotides LU632_RS09355 and LU632_RS09360 overlap by 1 nucleotides
LU632_RS09345: LU632_RS09345 - IS3 family transposase, at 1,769,606 to 1,770,770
_RS09345
LU632_RS09350: LU632_RS09350 - protein YohO, at 1,770,907 to 1,771,011
_RS09350
LU632_RS09355: LU632_RS09355 - DUF3833 domain-containing protein, at 1,771,093 to 1,771,626
_RS09355
LU632_RS09360: LU632_RS09360 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,771,626 to 1,772,861
_RS09360
Position (kb) 1771
1772 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1770.775 kb on + strand at 1770.837 kb on - strand at 1770.848 kb on + strand at 1770.849 kb on - strand at 1770.849 kb on - strand at 1770.929 kb on + strand, within LU632_RS09350 at 1771.012 kb on - strand at 1771.027 kb on - strand at 1771.052 kb on - strand at 1771.052 kb on - strand at 1771.052 kb on - strand at 1771.229 kb on + strand, within LU632_RS09355 at 1771.230 kb on - strand, within LU632_RS09355 at 1771.230 kb on - strand, within LU632_RS09355 at 1771.250 kb on - strand, within LU632_RS09355 at 1771.559 kb on + strand, within LU632_RS09355 at 1771.560 kb on - strand, within LU632_RS09355 at 1771.560 kb on - strand, within LU632_RS09355 at 1771.560 kb on - strand, within LU632_RS09355 at 1771.564 kb on - strand, within LU632_RS09355 at 1771.564 kb on - strand, within LU632_RS09355 at 1771.699 kb on + strand at 1771.708 kb on + strand at 1771.777 kb on + strand, within LU632_RS09360 at 1771.810 kb on + strand, within LU632_RS09360 at 1771.845 kb on - strand, within LU632_RS09360 at 1771.877 kb on + strand, within LU632_RS09360 at 1771.878 kb on + strand, within LU632_RS09360 at 1771.911 kb on - strand, within LU632_RS09360 at 1772.039 kb on + strand, within LU632_RS09360 at 1772.040 kb on - strand, within LU632_RS09360 at 1772.040 kb on - strand, within LU632_RS09360 at 1772.090 kb on - strand, within LU632_RS09360 at 1772.174 kb on - strand, within LU632_RS09360 at 1772.174 kb on - strand, within LU632_RS09360 at 1772.174 kb on - strand, within LU632_RS09360 at 1772.179 kb on + strand, within LU632_RS09360 at 1772.179 kb on + strand, within LU632_RS09360 at 1772.179 kb on + strand, within LU632_RS09360 at 1772.180 kb on - strand, within LU632_RS09360 at 1772.222 kb on - strand, within LU632_RS09360 at 1772.365 kb on + strand, within LU632_RS09360 at 1772.366 kb on - strand, within LU632_RS09360 at 1772.410 kb on + strand, within LU632_RS09360 at 1772.432 kb on - strand, within LU632_RS09360 at 1772.432 kb on - strand, within LU632_RS09360 at 1772.533 kb on - strand, within LU632_RS09360 at 1772.537 kb on + strand, within LU632_RS09360 at 1772.614 kb on + strand, within LU632_RS09360 at 1772.614 kb on + strand, within LU632_RS09360 at 1772.615 kb on - strand, within LU632_RS09360 at 1772.615 kb on - strand, within LU632_RS09360 at 1772.615 kb on - strand, within LU632_RS09360
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 1,770,775 + -1.1 1,770,837 - -2.9 1,770,848 + +0.5 1,770,849 - -0.1 1,770,849 - +0.0 1,770,929 + LU632_RS09350 0.21 -0.9 1,771,012 - +2.2 1,771,027 - -0.4 1,771,052 - -0.7 1,771,052 - +1.3 1,771,052 - +1.0 1,771,229 + LU632_RS09355 0.25 -0.4 1,771,230 - LU632_RS09355 0.26 -1.2 1,771,230 - LU632_RS09355 0.26 +0.5 1,771,250 - LU632_RS09355 0.29 +0.3 1,771,559 + LU632_RS09355 0.87 +2.9 1,771,560 - LU632_RS09355 0.87 -0.7 1,771,560 - LU632_RS09355 0.87 -2.4 1,771,560 - LU632_RS09355 0.87 -3.0 1,771,564 - LU632_RS09355 0.88 -3.1 1,771,564 - LU632_RS09355 0.88 +1.9 1,771,699 + -1.8 1,771,708 + -0.3 1,771,777 + LU632_RS09360 0.12 +0.4 1,771,810 + LU632_RS09360 0.15 +0.4 1,771,845 - LU632_RS09360 0.18 +1.0 1,771,877 + LU632_RS09360 0.20 -1.9 1,771,878 + LU632_RS09360 0.20 +0.6 1,771,911 - LU632_RS09360 0.23 -0.6 1,772,039 + LU632_RS09360 0.33 -0.1 1,772,040 - LU632_RS09360 0.33 -4.1 1,772,040 - LU632_RS09360 0.33 -0.9 1,772,090 - LU632_RS09360 0.38 -1.4 1,772,174 - LU632_RS09360 0.44 -1.1 1,772,174 - LU632_RS09360 0.44 -1.3 1,772,174 - LU632_RS09360 0.44 +0.3 1,772,179 + LU632_RS09360 0.45 -1.7 1,772,179 + LU632_RS09360 0.45 -3.0 1,772,179 + LU632_RS09360 0.45 +0.1 1,772,180 - LU632_RS09360 0.45 -0.1 1,772,222 - LU632_RS09360 0.48 +3.5 1,772,365 + LU632_RS09360 0.60 +0.9 1,772,366 - LU632_RS09360 0.60 +1.2 1,772,410 + LU632_RS09360 0.63 -1.1 1,772,432 - LU632_RS09360 0.65 -0.1 1,772,432 - LU632_RS09360 0.65 -1.9 1,772,533 - LU632_RS09360 0.73 +1.7 1,772,537 + LU632_RS09360 0.74 +0.8 1,772,614 + LU632_RS09360 0.80 -1.1 1,772,614 + LU632_RS09360 0.80 +0.4 1,772,615 - LU632_RS09360 0.80 +0.1 1,772,615 - LU632_RS09360 0.80 +0.1 1,772,615 - LU632_RS09360 0.80 +0.5
Or see this region's nucleotide sequence