Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09250

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
1,745,649	+		LU632_RS09245	0.45	-2.6
1,745,649	+		LU632_RS09245	0.45	-0.1
1,745,649	+		LU632_RS09245	0.45	-0.9
1,745,650	-		LU632_RS09245	0.45	-0.7
1,745,745	+		LU632_RS09245	0.53	-2.1
1,745,748	-		LU632_RS09245	0.53	-2.7
1,745,748	-		LU632_RS09245	0.53	-1.4
1,745,792	+		LU632_RS09245	0.57	-3.0
1,745,792	+		LU632_RS09245	0.57	-1.4
1,745,792	+		LU632_RS09245	0.57	-0.9
1,745,793	-		LU632_RS09245	0.57	-3.2
1,745,793	-		LU632_RS09245	0.57	-1.1
1,745,793	-		LU632_RS09245	0.57	-2.7
1,745,871	+		LU632_RS09245	0.64	-1.1
1,746,054	+		LU632_RS09245	0.79	-1.9
1,746,055	-		LU632_RS09245	0.79	-1.9
1,746,252	-				-0.7
1,746,376	+				+0.9
1,746,378	+				-0.1
1,746,379	-				+0.3
1,746,379	-				+3.0
1,746,379	-				-1.2
1,746,379	-				+1.0
1,746,379	-				+1.0
1,746,429	-				-1.1
1,746,474	+				-1.6
1,746,474	+				+0.1
1,746,637	-		LU632_RS09250	0.38	-2.4
1,746,641	+		LU632_RS09250	0.39	-0.1
1,746,641	+		LU632_RS09250	0.39	+1.0
1,746,642	-		LU632_RS09250	0.40	-2.1
1,746,642	-		LU632_RS09250	0.40	-2.1
1,746,642	-		LU632_RS09250	0.40	+0.4
1,746,642	-		LU632_RS09250	0.40	-1.6
1,746,642	-		LU632_RS09250	0.40	-1.1
1,746,775	+		LU632_RS09250	0.72	-1.1
1,746,776	-		LU632_RS09250	0.73	+1.5
1,746,776	-		LU632_RS09250	0.73	+0.6
1,746,777	+		LU632_RS09250	0.73	+0.6
1,747,006	+		LU632_RS09255	0.24	+0.3
1,747,006	+		LU632_RS09255	0.24	-0.0
1,747,006	+		LU632_RS09255	0.24	-0.1
1,747,007	-		LU632_RS09255	0.24	-3.0
1,747,063	-		LU632_RS09255	0.36	-2.4
1,747,063	-		LU632_RS09255	0.36	+0.1
1,747,064	+		LU632_RS09255	0.36	+1.1
1,747,064	+		LU632_RS09255	0.36	+1.3
1,747,064	+		LU632_RS09255	0.36	-0.8
1,747,064	+		LU632_RS09255	0.36	-0.1
1,747,064	+		LU632_RS09255	0.36	+0.1
1,747,064	+		LU632_RS09255	0.36	+0.9
1,747,065	-		LU632_RS09255	0.36	-1.1
1,747,065	-		LU632_RS09255	0.36	+0.4
1,747,065	-		LU632_RS09255	0.36	+0.9
1,747,065	-		LU632_RS09255	0.36	-1.9
1,747,065	-		LU632_RS09255	0.36	-0.5
1,747,066	+		LU632_RS09255	0.37	+0.5
1,747,066	+		LU632_RS09255	0.37	-1.4
1,747,067	-		LU632_RS09255	0.37	-0.5
1,747,173	+		LU632_RS09255	0.59	-1.9
1,747,288	-		LU632_RS09255	0.84	+2.5
1,747,361	+				+0.1
1,747,361	+				-1.4
1,747,361	+				+0.1
1,747,362	-				+0.5
1,747,362	-				+2.8
1,747,362	-				-1.0
1,747,476	-				+1.3
1,747,490	-				-0.7
1,747,533	+				-1.4
1,747,533	+				+1.1
1,747,580	-				-3.1
1,747,710	+		LU632_RS09260	0.12	-0.7
1,747,710	+		LU632_RS09260	0.12	-3.3
1,747,711	-		LU632_RS09260	0.13	+0.9
1,747,711	-		LU632_RS09260	0.13	+2.5
1,747,721	+		LU632_RS09260	0.14	+3.4
1,747,722	-		LU632_RS09260	0.15	+1.1
1,747,722	-		LU632_RS09260	0.15	-0.3
1,747,722	-		LU632_RS09260	0.15	-0.1
1,747,738	-		LU632_RS09260	0.17	+0.7
1,747,742	-		LU632_RS09260	0.18	-0.1
1,747,860	+		LU632_RS09260	0.38	-2.2
1,747,860	+		LU632_RS09260	0.38	-1.5