Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS09105 and LU632_RS09110 are separated by 56 nucleotides LU632_RS09110 and LU632_RS09115 are separated by 22 nucleotides LU632_RS09115 and LU632_RS09120 are separated by 22 nucleotides
LU632_RS09105: LU632_RS09105 - fimbrial protein, at 1,712,748 to 1,713,347
_RS09105
LU632_RS09110: LU632_RS09110 - molecular chaperone, at 1,713,404 to 1,714,144
_RS09110
LU632_RS09115: LU632_RS09115 - fimbrial biogenesis outer membrane usher protein, at 1,714,167 to 1,716,689
_RS09115
LU632_RS09120: LU632_RS09120 - fimbrial protein, at 1,716,712 to 1,717,761
_RS09120
Position (kb) 1714
1715
1716
1717 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1713.221 kb on - strand, within LU632_RS09105 at 1713.228 kb on + strand, within LU632_RS09105 at 1713.229 kb on - strand, within LU632_RS09105 at 1713.251 kb on + strand, within LU632_RS09105 at 1713.271 kb on - strand, within LU632_RS09105 at 1713.273 kb on + strand, within LU632_RS09105 at 1713.274 kb on - strand, within LU632_RS09105 at 1713.274 kb on - strand, within LU632_RS09105 at 1713.276 kb on - strand, within LU632_RS09105 at 1713.279 kb on + strand, within LU632_RS09105 at 1713.280 kb on - strand, within LU632_RS09105 at 1713.280 kb on - strand, within LU632_RS09105 at 1713.336 kb on - strand at 1713.340 kb on - strand at 1713.385 kb on - strand at 1713.567 kb on + strand, within LU632_RS09110 at 1713.782 kb on + strand, within LU632_RS09110 at 1713.783 kb on - strand, within LU632_RS09110 at 1713.902 kb on - strand, within LU632_RS09110 at 1713.995 kb on - strand, within LU632_RS09110 at 1714.316 kb on + strand at 1714.347 kb on + strand at 1714.347 kb on + strand at 1714.348 kb on - strand at 1714.348 kb on - strand at 1714.348 kb on - strand at 1714.348 kb on - strand at 1714.362 kb on + strand at 1714.362 kb on + strand at 1714.362 kb on + strand at 1714.362 kb on + strand at 1714.362 kb on + strand at 1714.363 kb on - strand at 1714.363 kb on - strand at 1714.415 kb on + strand at 1714.415 kb on + strand at 1714.416 kb on - strand at 1714.546 kb on + strand, within LU632_RS09115 at 1714.550 kb on - strand, within LU632_RS09115 at 1714.578 kb on + strand, within LU632_RS09115 at 1714.578 kb on + strand, within LU632_RS09115 at 1714.578 kb on + strand, within LU632_RS09115 at 1714.578 kb on + strand, within LU632_RS09115 at 1714.579 kb on - strand, within LU632_RS09115 at 1714.579 kb on - strand, within LU632_RS09115 at 1714.579 kb on - strand, within LU632_RS09115 at 1714.579 kb on - strand, within LU632_RS09115 at 1714.584 kb on - strand, within LU632_RS09115 at 1714.644 kb on + strand, within LU632_RS09115 at 1714.644 kb on + strand, within LU632_RS09115 at 1714.645 kb on - strand, within LU632_RS09115 at 1714.645 kb on - strand, within LU632_RS09115 at 1714.646 kb on + strand, within LU632_RS09115 at 1714.646 kb on + strand, within LU632_RS09115 at 1714.646 kb on + strand, within LU632_RS09115 at 1714.649 kb on + strand, within LU632_RS09115 at 1714.653 kb on + strand, within LU632_RS09115 at 1714.653 kb on + strand, within LU632_RS09115 at 1714.654 kb on - strand, within LU632_RS09115 at 1714.666 kb on - strand, within LU632_RS09115 at 1714.794 kb on - strand, within LU632_RS09115 at 1714.811 kb on + strand, within LU632_RS09115 at 1714.822 kb on - strand, within LU632_RS09115 at 1714.823 kb on + strand, within LU632_RS09115 at 1714.918 kb on + strand, within LU632_RS09115 at 1714.965 kb on + strand, within LU632_RS09115 at 1714.965 kb on + strand, within LU632_RS09115 at 1714.965 kb on + strand, within LU632_RS09115 at 1714.966 kb on - strand, within LU632_RS09115 at 1714.966 kb on - strand, within LU632_RS09115 at 1714.967 kb on + strand, within LU632_RS09115 at 1714.967 kb on + strand, within LU632_RS09115 at 1715.028 kb on - strand, within LU632_RS09115 at 1715.037 kb on + strand, within LU632_RS09115 at 1715.046 kb on - strand, within LU632_RS09115 at 1715.080 kb on + strand, within LU632_RS09115 at 1715.161 kb on - strand, within LU632_RS09115 at 1715.286 kb on - strand, within LU632_RS09115 at 1715.289 kb on - strand, within LU632_RS09115 at 1715.289 kb on - strand, within LU632_RS09115 at 1715.289 kb on - strand, within LU632_RS09115 at 1715.293 kb on - strand, within LU632_RS09115 at 1715.360 kb on + strand, within LU632_RS09115 at 1715.361 kb on - strand, within LU632_RS09115 at 1715.486 kb on + strand, within LU632_RS09115 at 1715.508 kb on + strand, within LU632_RS09115 at 1715.526 kb on + strand, within LU632_RS09115 at 1715.526 kb on + strand, within LU632_RS09115 at 1715.686 kb on - strand, within LU632_RS09115 at 1715.782 kb on - strand, within LU632_RS09115 at 1715.856 kb on + strand, within LU632_RS09115 at 1715.858 kb on - strand, within LU632_RS09115 at 1715.955 kb on + strand, within LU632_RS09115 at 1715.956 kb on - strand, within LU632_RS09115 at 1715.956 kb on - strand, within LU632_RS09115 at 1715.956 kb on - strand, within LU632_RS09115 at 1715.956 kb on - strand, within LU632_RS09115 at 1715.956 kb on - strand, within LU632_RS09115 at 1715.956 kb on - strand, within LU632_RS09115 at 1716.003 kb on + strand, within LU632_RS09115 at 1716.003 kb on + strand, within LU632_RS09115 at 1716.004 kb on - strand, within LU632_RS09115 at 1716.004 kb on - strand, within LU632_RS09115 at 1716.015 kb on + strand, within LU632_RS09115 at 1716.016 kb on - strand, within LU632_RS09115 at 1716.078 kb on + strand, within LU632_RS09115 at 1716.197 kb on + strand, within LU632_RS09115 at 1716.197 kb on + strand, within LU632_RS09115 at 1716.198 kb on - strand, within LU632_RS09115 at 1716.309 kb on - strand, within LU632_RS09115 at 1716.412 kb on - strand, within LU632_RS09115 at 1716.550 kb on + strand at 1716.550 kb on + strand at 1716.550 kb on + strand at 1716.550 kb on + strand at 1716.550 kb on + strand at 1716.550 kb on + strand at 1716.551 kb on - strand at 1716.551 kb on - strand at 1716.551 kb on - strand at 1716.551 kb on - strand at 1716.552 kb on + strand at 1716.552 kb on + strand at 1716.552 kb on + strand at 1716.552 kb on + strand at 1716.552 kb on + strand at 1716.552 kb on + strand at 1716.552 kb on + strand at 1716.553 kb on - strand at 1716.554 kb on + strand at 1716.554 kb on + strand at 1716.554 kb on + strand at 1716.554 kb on + strand at 1716.555 kb on - strand at 1716.555 kb on - strand at 1716.615 kb on - strand at 1716.681 kb on + strand at 1716.707 kb on + strand at 1716.721 kb on - strand at 1716.731 kb on + strand at 1716.733 kb on + strand at 1716.733 kb on + strand at 1716.733 kb on + strand at 1716.733 kb on + strand at 1716.734 kb on + strand at 1716.734 kb on - strand at 1716.734 kb on - strand at 1716.738 kb on + strand at 1716.738 kb on + strand at 1716.738 kb on + strand at 1716.739 kb on - strand at 1716.739 kb on - strand at 1716.739 kb on - strand at 1716.739 kb on - strand at 1716.935 kb on - strand, within LU632_RS09120 at 1717.014 kb on + strand, within LU632_RS09120 at 1717.021 kb on + strand, within LU632_RS09120 at 1717.021 kb on + strand, within LU632_RS09120 at 1717.023 kb on + strand, within LU632_RS09120 at 1717.024 kb on - strand, within LU632_RS09120 at 1717.024 kb on - strand, within LU632_RS09120 at 1717.039 kb on + strand, within LU632_RS09120 at 1717.081 kb on + strand, within LU632_RS09120 at 1717.081 kb on + strand, within LU632_RS09120 at 1717.081 kb on + strand, within LU632_RS09120 at 1717.082 kb on - strand, within LU632_RS09120 at 1717.082 kb on - strand, within LU632_RS09120 at 1717.135 kb on + strand, within LU632_RS09120 at 1717.135 kb on + strand, within LU632_RS09120 at 1717.135 kb on + strand, within LU632_RS09120 at 1717.136 kb on - strand, within LU632_RS09120 at 1717.138 kb on + strand, within LU632_RS09120 at 1717.138 kb on + strand, within LU632_RS09120 at 1717.138 kb on + strand, within LU632_RS09120 at 1717.139 kb on - strand, within LU632_RS09120 at 1717.139 kb on - strand, within LU632_RS09120 at 1717.143 kb on + strand, within LU632_RS09120 at 1717.143 kb on + strand, within LU632_RS09120 at 1717.143 kb on + strand, within LU632_RS09120 at 1717.144 kb on - strand, within LU632_RS09120 at 1717.144 kb on - strand, within LU632_RS09120 at 1717.181 kb on + strand, within LU632_RS09120 at 1717.181 kb on + strand, within LU632_RS09120 at 1717.184 kb on + strand, within LU632_RS09120 at 1717.184 kb on + strand, within LU632_RS09120 at 1717.184 kb on + strand, within LU632_RS09120 at 1717.184 kb on + strand, within LU632_RS09120 at 1717.185 kb on - strand, within LU632_RS09120 at 1717.185 kb on - strand, within LU632_RS09120 at 1717.185 kb on - strand, within LU632_RS09120 at 1717.185 kb on - strand, within LU632_RS09120 at 1717.185 kb on - strand, within LU632_RS09120 at 1717.277 kb on - strand, within LU632_RS09120 at 1717.277 kb on - strand, within LU632_RS09120 at 1717.308 kb on + strand, within LU632_RS09120 at 1717.308 kb on + strand, within LU632_RS09120 at 1717.467 kb on - strand, within LU632_RS09120 at 1717.510 kb on + strand, within LU632_RS09120 at 1717.510 kb on + strand, within LU632_RS09120 at 1717.511 kb on - strand, within LU632_RS09120 at 1717.511 kb on - strand, within LU632_RS09120 at 1717.511 kb on - strand, within LU632_RS09120 at 1717.512 kb on + strand, within LU632_RS09120 at 1717.512 kb on + strand, within LU632_RS09120 at 1717.513 kb on - strand, within LU632_RS09120
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 1,713,221 - LU632_RS09105 0.79 +0.6 1,713,228 + LU632_RS09105 0.80 -1.9 1,713,229 - LU632_RS09105 0.80 +1.2 1,713,251 + LU632_RS09105 0.84 +0.3 1,713,271 - LU632_RS09105 0.87 -1.2 1,713,273 + LU632_RS09105 0.88 -1.1 1,713,274 - LU632_RS09105 0.88 -0.7 1,713,274 - LU632_RS09105 0.88 +2.6 1,713,276 - LU632_RS09105 0.88 +0.5 1,713,279 + LU632_RS09105 0.89 +0.0 1,713,280 - LU632_RS09105 0.89 -1.2 1,713,280 - LU632_RS09105 0.89 +0.0 1,713,336 - +0.2 1,713,340 - -0.3 1,713,385 - -0.3 1,713,567 + LU632_RS09110 0.22 -1.6 1,713,782 + LU632_RS09110 0.51 -1.1 1,713,783 - LU632_RS09110 0.51 +1.4 1,713,902 - LU632_RS09110 0.67 +1.5 1,713,995 - LU632_RS09110 0.80 +1.0 1,714,316 + -0.1 1,714,347 + +2.0 1,714,347 + -1.4 1,714,348 - -1.9 1,714,348 - -0.1 1,714,348 - +1.2 1,714,348 - -0.1 1,714,362 + -0.4 1,714,362 + -0.7 1,714,362 + -1.6 1,714,362 + +0.2 1,714,362 + -0.4 1,714,363 - +0.4 1,714,363 - -1.6 1,714,415 + -0.1 1,714,415 + +0.6 1,714,416 - -0.3 1,714,546 + LU632_RS09115 0.15 -0.2 1,714,550 - LU632_RS09115 0.15 -0.3 1,714,578 + LU632_RS09115 0.16 +0.1 1,714,578 + LU632_RS09115 0.16 -0.7 1,714,578 + LU632_RS09115 0.16 -2.3 1,714,578 + LU632_RS09115 0.16 +0.4 1,714,579 - LU632_RS09115 0.16 +1.7 1,714,579 - LU632_RS09115 0.16 +1.1 1,714,579 - LU632_RS09115 0.16 -0.1 1,714,579 - LU632_RS09115 0.16 -2.4 1,714,584 - LU632_RS09115 0.17 +0.4 1,714,644 + LU632_RS09115 0.19 +2.8 1,714,644 + LU632_RS09115 0.19 -0.7 1,714,645 - LU632_RS09115 0.19 -0.7 1,714,645 - LU632_RS09115 0.19 +0.2 1,714,646 + LU632_RS09115 0.19 -3.0 1,714,646 + LU632_RS09115 0.19 -0.2 1,714,646 + LU632_RS09115 0.19 -0.7 1,714,649 + LU632_RS09115 0.19 +0.2 1,714,653 + LU632_RS09115 0.19 +1.4 1,714,653 + LU632_RS09115 0.19 -1.9 1,714,654 - LU632_RS09115 0.19 +0.9 1,714,666 - LU632_RS09115 0.20 -0.4 1,714,794 - LU632_RS09115 0.25 -1.7 1,714,811 + LU632_RS09115 0.26 -1.1 1,714,822 - LU632_RS09115 0.26 -0.4 1,714,823 + LU632_RS09115 0.26 -2.2 1,714,918 + LU632_RS09115 0.30 -2.4 1,714,965 + LU632_RS09115 0.32 +1.2 1,714,965 + LU632_RS09115 0.32 +0.0 1,714,965 + LU632_RS09115 0.32 -1.4 1,714,966 - LU632_RS09115 0.32 -1.7 1,714,966 - LU632_RS09115 0.32 +0.5 1,714,967 + LU632_RS09115 0.32 +0.7 1,714,967 + LU632_RS09115 0.32 +0.9 1,715,028 - LU632_RS09115 0.34 +1.1 1,715,037 + LU632_RS09115 0.34 +2.8 1,715,046 - LU632_RS09115 0.35 -1.1 1,715,080 + LU632_RS09115 0.36 -0.5 1,715,161 - LU632_RS09115 0.39 +2.7 1,715,286 - LU632_RS09115 0.44 +0.0 1,715,289 - LU632_RS09115 0.44 +1.0 1,715,289 - LU632_RS09115 0.44 +0.9 1,715,289 - LU632_RS09115 0.44 -0.9 1,715,293 - LU632_RS09115 0.45 -0.1 1,715,360 + LU632_RS09115 0.47 +0.1 1,715,361 - LU632_RS09115 0.47 +2.5 1,715,486 + LU632_RS09115 0.52 -0.7 1,715,508 + LU632_RS09115 0.53 +3.0 1,715,526 + LU632_RS09115 0.54 -4.4 1,715,526 + LU632_RS09115 0.54 -0.5 1,715,686 - LU632_RS09115 0.60 +0.2 1,715,782 - LU632_RS09115 0.64 -0.7 1,715,856 + LU632_RS09115 0.67 -3.3 1,715,858 - LU632_RS09115 0.67 +0.0 1,715,955 + LU632_RS09115 0.71 -2.5 1,715,956 - LU632_RS09115 0.71 +0.5 1,715,956 - LU632_RS09115 0.71 -0.6 1,715,956 - LU632_RS09115 0.71 -0.7 1,715,956 - LU632_RS09115 0.71 +1.9 1,715,956 - LU632_RS09115 0.71 -1.1 1,715,956 - LU632_RS09115 0.71 -0.4 1,716,003 + LU632_RS09115 0.73 +0.9 1,716,003 + LU632_RS09115 0.73 -1.6 1,716,004 - LU632_RS09115 0.73 +0.1 1,716,004 - LU632_RS09115 0.73 +0.3 1,716,015 + LU632_RS09115 0.73 +0.6 1,716,016 - LU632_RS09115 0.73 +1.0 1,716,078 + LU632_RS09115 0.76 -1.2 1,716,197 + LU632_RS09115 0.80 -0.1 1,716,197 + LU632_RS09115 0.80 -0.7 1,716,198 - LU632_RS09115 0.80 +0.3 1,716,309 - LU632_RS09115 0.85 +0.1 1,716,412 - LU632_RS09115 0.89 +0.7 1,716,550 + -1.1 1,716,550 + -0.1 1,716,550 + -1.9 1,716,550 + +0.6 1,716,550 + -2.1 1,716,550 + -1.4 1,716,551 - -0.4 1,716,551 - -0.5 1,716,551 - -0.4 1,716,551 - +1.5 1,716,552 + -2.0 1,716,552 + +0.2 1,716,552 + -2.6 1,716,552 + -2.0 1,716,552 + -0.8 1,716,552 + +1.2 1,716,552 + -0.1 1,716,553 - +0.1 1,716,554 + -1.1 1,716,554 + -0.1 1,716,554 + -1.1 1,716,554 + +0.9 1,716,555 - -2.7 1,716,555 - -2.1 1,716,615 - -1.4 1,716,681 + +0.9 1,716,707 + +2.2 1,716,721 - +0.1 1,716,731 + +0.2 1,716,733 + -1.1 1,716,733 + -1.1 1,716,733 + -0.5 1,716,733 + -1.7 1,716,734 + +0.9 1,716,734 - -2.4 1,716,734 - +2.1 1,716,738 + -1.3 1,716,738 + +0.4 1,716,738 + +4.0 1,716,739 - +0.8 1,716,739 - +0.7 1,716,739 - +0.4 1,716,739 - -1.3 1,716,935 - LU632_RS09120 0.21 +2.8 1,717,014 + LU632_RS09120 0.29 -0.4 1,717,021 + LU632_RS09120 0.29 -2.3 1,717,021 + LU632_RS09120 0.29 -1.9 1,717,023 + LU632_RS09120 0.30 -2.4 1,717,024 - LU632_RS09120 0.30 +0.7 1,717,024 - LU632_RS09120 0.30 +1.5 1,717,039 + LU632_RS09120 0.31 +0.6 1,717,081 + LU632_RS09120 0.35 +1.1 1,717,081 + LU632_RS09120 0.35 -1.7 1,717,081 + LU632_RS09120 0.35 +0.5 1,717,082 - LU632_RS09120 0.35 -2.3 1,717,082 - LU632_RS09120 0.35 +0.2 1,717,135 + LU632_RS09120 0.40 -1.9 1,717,135 + LU632_RS09120 0.40 +0.9 1,717,135 + LU632_RS09120 0.40 -0.7 1,717,136 - LU632_RS09120 0.40 +0.3 1,717,138 + LU632_RS09120 0.41 -0.9 1,717,138 + LU632_RS09120 0.41 +0.9 1,717,138 + LU632_RS09120 0.41 -1.7 1,717,139 - LU632_RS09120 0.41 +0.9 1,717,139 - LU632_RS09120 0.41 -1.5 1,717,143 + LU632_RS09120 0.41 -1.1 1,717,143 + LU632_RS09120 0.41 +2.0 1,717,143 + LU632_RS09120 0.41 +0.5 1,717,144 - LU632_RS09120 0.41 +0.2 1,717,144 - LU632_RS09120 0.41 -0.7 1,717,181 + LU632_RS09120 0.45 -0.4 1,717,181 + LU632_RS09120 0.45 -0.7 1,717,184 + LU632_RS09120 0.45 -0.5 1,717,184 + LU632_RS09120 0.45 -2.4 1,717,184 + LU632_RS09120 0.45 +0.9 1,717,184 + LU632_RS09120 0.45 +1.9 1,717,185 - LU632_RS09120 0.45 +1.1 1,717,185 - LU632_RS09120 0.45 -1.4 1,717,185 - LU632_RS09120 0.45 -1.1 1,717,185 - LU632_RS09120 0.45 -2.1 1,717,185 - LU632_RS09120 0.45 +1.4 1,717,277 - LU632_RS09120 0.54 +0.3 1,717,277 - LU632_RS09120 0.54 -0.3 1,717,308 + LU632_RS09120 0.57 -0.3 1,717,308 + LU632_RS09120 0.57 +3.3 1,717,467 - LU632_RS09120 0.72 +0.8 1,717,510 + LU632_RS09120 0.76 +0.6 1,717,510 + LU632_RS09120 0.76 -0.9 1,717,511 - LU632_RS09120 0.76 -2.2 1,717,511 - LU632_RS09120 0.76 +1.0 1,717,511 - LU632_RS09120 0.76 +0.5 1,717,512 + LU632_RS09120 0.76 -1.1 1,717,512 + LU632_RS09120 0.76 +0.2 1,717,513 - LU632_RS09120 0.76 +1.9
Or see this region's nucleotide sequence