Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08875 and LU632_RS08880 are separated by 75 nucleotides LU632_RS08880 and LU632_RS08885 are separated by 7 nucleotides LU632_RS08885 and gndA are separated by 184 nucleotides
LU632_RS08875: LU632_RS08875 - hypothetical protein, at 1,675,732 to 1,677,027
_RS08875
LU632_RS08880: LU632_RS08880 - ABC transporter permease, at 1,677,103 to 1,677,828
_RS08880
LU632_RS08885: LU632_RS08885 - ABC transporter ATP-binding protein, at 1,677,836 to 1,678,600
_RS08885
LU632_RS08890: gndA - NADP-dependent phosphogluconate dehydrogenase, at 1,678,785 to 1,680,191
gndA
Position (kb) 1677
1678
1679 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1677.166 kb on - strand at 1677.291 kb on + strand, within LU632_RS08880 at 1677.599 kb on - strand, within LU632_RS08880 at 1677.657 kb on - strand, within LU632_RS08880 at 1677.737 kb on - strand, within LU632_RS08880 at 1678.060 kb on - strand, within LU632_RS08885 at 1678.060 kb on - strand, within LU632_RS08885 at 1678.182 kb on - strand, within LU632_RS08885 at 1678.292 kb on + strand, within LU632_RS08885 at 1678.357 kb on - strand, within LU632_RS08885 at 1678.428 kb on + strand, within LU632_RS08885 at 1678.428 kb on + strand, within LU632_RS08885 at 1678.582 kb on + strand at 1678.783 kb on + strand at 1679.188 kb on + strand, within gndA at 1679.189 kb on - strand, within gndA at 1679.205 kb on - strand, within gndA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 1,677,166 - -4.6 1,677,291 + LU632_RS08880 0.26 -3.6 1,677,599 - LU632_RS08880 0.68 -3.6 1,677,657 - LU632_RS08880 0.76 -2.6 1,677,737 - LU632_RS08880 0.87 -3.0 1,678,060 - LU632_RS08885 0.29 -3.5 1,678,060 - LU632_RS08885 0.29 -4.5 1,678,182 - LU632_RS08885 0.45 -1.9 1,678,292 + LU632_RS08885 0.60 -1.8 1,678,357 - LU632_RS08885 0.68 -3.6 1,678,428 + LU632_RS08885 0.77 -5.4 1,678,428 + LU632_RS08885 0.77 -2.7 1,678,582 + +0.9 1,678,783 + -0.7 1,679,188 + gndA LU632_RS08890 0.29 +0.9 1,679,189 - gndA LU632_RS08890 0.29 +1.9 1,679,205 - gndA LU632_RS08890 0.30 +1.4
Or see this region's nucleotide sequence