Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wbaP and LU632_RS08770 are separated by 267 nucleotides LU632_RS08770 and LU632_RS08775 are separated by 15 nucleotides LU632_RS08775 and wzc are separated by 12 nucleotides
LU632_RS08765: wbaP - undecaprenyl-phosphate galactose phosphotransferase WbaP, at 1,646,810 to 1,648,243
wbaP
LU632_RS08770: LU632_RS08770 - polysaccharide export protein, at 1,648,511 to 1,649,644
_RS08770
LU632_RS08775: LU632_RS08775 - protein tyrosine phosphatase, at 1,649,660 to 1,650,094
_RS08775
LU632_RS08780: wzc - tyrosine-protein kinase Wzc, at 1,650,107 to 1,652,290
wzc
Position (kb) 1648
1649
1650 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 1647.535 kb on - strand, within wbaP at 1647.559 kb on - strand, within wbaP at 1647.559 kb on - strand, within wbaP at 1647.579 kb on - strand, within wbaP at 1647.697 kb on + strand, within wbaP at 1647.698 kb on - strand, within wbaP at 1647.718 kb on + strand, within wbaP at 1647.718 kb on + strand, within wbaP at 1647.788 kb on - strand, within wbaP at 1648.022 kb on - strand, within wbaP at 1648.022 kb on - strand, within wbaP at 1648.062 kb on - strand, within wbaP at 1648.064 kb on + strand, within wbaP at 1648.065 kb on - strand, within wbaP at 1648.067 kb on + strand, within wbaP at 1648.067 kb on + strand, within wbaP at 1648.067 kb on + strand, within wbaP at 1648.067 kb on + strand, within wbaP at 1648.067 kb on + strand, within wbaP at 1648.067 kb on + strand, within wbaP at 1648.067 kb on + strand, within wbaP at 1648.067 kb on + strand, within wbaP at 1648.068 kb on - strand, within wbaP at 1648.068 kb on - strand, within wbaP at 1648.068 kb on - strand, within wbaP at 1648.069 kb on + strand, within wbaP at 1648.069 kb on + strand, within wbaP at 1648.143 kb on - strand at 1648.162 kb on - strand at 1648.288 kb on - strand at 1648.303 kb on + strand at 1648.304 kb on - strand at 1648.308 kb on + strand at 1648.308 kb on + strand at 1648.340 kb on + strand at 1648.341 kb on - strand at 1648.341 kb on - strand at 1648.395 kb on - strand at 1648.396 kb on + strand at 1648.396 kb on + strand at 1648.396 kb on + strand at 1648.396 kb on + strand at 1648.397 kb on - strand at 1648.407 kb on + strand at 1648.408 kb on - strand at 1648.411 kb on + strand at 1648.411 kb on + strand at 1648.414 kb on + strand at 1648.414 kb on + strand at 1648.414 kb on + strand at 1648.441 kb on + strand at 1648.458 kb on - strand at 1648.492 kb on - strand at 1648.517 kb on - strand at 1648.542 kb on + strand at 1648.549 kb on + strand at 1648.549 kb on + strand at 1648.556 kb on - strand at 1648.651 kb on + strand, within LU632_RS08770 at 1648.656 kb on - strand, within LU632_RS08770 at 1648.656 kb on - strand, within LU632_RS08770 at 1648.717 kb on - strand, within LU632_RS08770 at 1648.749 kb on + strand, within LU632_RS08770 at 1648.750 kb on - strand, within LU632_RS08770 at 1648.862 kb on - strand, within LU632_RS08770 at 1648.885 kb on + strand, within LU632_RS08770 at 1648.886 kb on - strand, within LU632_RS08770 at 1648.899 kb on - strand, within LU632_RS08770 at 1648.975 kb on + strand, within LU632_RS08770 at 1648.976 kb on - strand, within LU632_RS08770 at 1648.992 kb on + strand, within LU632_RS08770 at 1648.998 kb on + strand, within LU632_RS08770 at 1648.999 kb on - strand, within LU632_RS08770 at 1648.999 kb on - strand, within LU632_RS08770 at 1649.014 kb on + strand, within LU632_RS08770 at 1649.014 kb on + strand, within LU632_RS08770 at 1649.050 kb on + strand, within LU632_RS08770 at 1649.050 kb on + strand, within LU632_RS08770 at 1649.234 kb on + strand, within LU632_RS08770 at 1649.453 kb on - strand, within LU632_RS08770 at 1649.456 kb on + strand, within LU632_RS08770 at 1649.603 kb on + strand at 1649.603 kb on + strand at 1649.665 kb on + strand at 1649.695 kb on + strand at 1649.695 kb on + strand at 1649.769 kb on + strand, within LU632_RS08775 at 1649.770 kb on - strand, within LU632_RS08775 at 1649.771 kb on + strand, within LU632_RS08775 at 1649.771 kb on + strand, within LU632_RS08775 at 1649.772 kb on - strand, within LU632_RS08775 at 1649.851 kb on - strand, within LU632_RS08775 at 1649.967 kb on + strand, within LU632_RS08775 at 1649.968 kb on + strand, within LU632_RS08775 at 1649.983 kb on + strand, within LU632_RS08775 at 1650.042 kb on - strand, within LU632_RS08775 at 1650.048 kb on + strand, within LU632_RS08775 at 1650.049 kb on - strand, within LU632_RS08775 at 1650.085 kb on - strand at 1650.112 kb on + strand at 1650.113 kb on - strand at 1650.113 kb on - strand at 1650.121 kb on + strand at 1650.225 kb on + strand at 1650.226 kb on - strand at 1650.226 kb on - strand at 1650.229 kb on + strand at 1650.229 kb on + strand at 1650.230 kb on - strand at 1650.230 kb on - strand at 1650.248 kb on + strand at 1650.249 kb on - strand at 1650.249 kb on - strand at 1650.249 kb on - strand at 1650.516 kb on + strand, within wzc at 1650.517 kb on - strand, within wzc at 1650.517 kb on - strand, within wzc at 1650.622 kb on + strand, within wzc
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2) remove 1,647,535 - wbaP LU632_RS08765 0.51 +5.3 1,647,559 - wbaP LU632_RS08765 0.52 +6.5 1,647,559 - wbaP LU632_RS08765 0.52 -1.9 1,647,579 - wbaP LU632_RS08765 0.54 +5.8 1,647,697 + wbaP LU632_RS08765 0.62 -0.1 1,647,698 - wbaP LU632_RS08765 0.62 -0.1 1,647,718 + wbaP LU632_RS08765 0.63 +6.6 1,647,718 + wbaP LU632_RS08765 0.63 +5.8 1,647,788 - wbaP LU632_RS08765 0.68 +6.2 1,648,022 - wbaP LU632_RS08765 0.85 +6.4 1,648,022 - wbaP LU632_RS08765 0.85 +3.1 1,648,062 - wbaP LU632_RS08765 0.87 +5.1 1,648,064 + wbaP LU632_RS08765 0.87 +4.1 1,648,065 - wbaP LU632_RS08765 0.88 +8.5 1,648,067 + wbaP LU632_RS08765 0.88 +7.2 1,648,067 + wbaP LU632_RS08765 0.88 +5.1 1,648,067 + wbaP LU632_RS08765 0.88 +4.8 1,648,067 + wbaP LU632_RS08765 0.88 +5.4 1,648,067 + wbaP LU632_RS08765 0.88 -2.9 1,648,067 + wbaP LU632_RS08765 0.88 +0.9 1,648,067 + wbaP LU632_RS08765 0.88 +3.7 1,648,067 + wbaP LU632_RS08765 0.88 +4.7 1,648,068 - wbaP LU632_RS08765 0.88 +3.9 1,648,068 - wbaP LU632_RS08765 0.88 +0.4 1,648,068 - wbaP LU632_RS08765 0.88 +7.9 1,648,069 + wbaP LU632_RS08765 0.88 +5.3 1,648,069 + wbaP LU632_RS08765 0.88 -1.5 1,648,143 - +4.5 1,648,162 - +8.8 1,648,288 - -0.9 1,648,303 + +3.9 1,648,304 - -3.0 1,648,308 + -1.4 1,648,308 + -1.0 1,648,340 + +0.8 1,648,341 - +0.9 1,648,341 - -2.4 1,648,395 - +1.5 1,648,396 + +0.6 1,648,396 + -0.6 1,648,396 + -1.0 1,648,396 + -0.5 1,648,397 - -2.2 1,648,407 + -0.6 1,648,408 - -2.6 1,648,411 + -0.6 1,648,411 + +1.3 1,648,414 + +0.9 1,648,414 + +3.0 1,648,414 + +0.5 1,648,441 + +0.1 1,648,458 - -2.6 1,648,492 - -2.8 1,648,517 - -4.9 1,648,542 + -3.1 1,648,549 + -3.9 1,648,549 + -2.4 1,648,556 - -5.6 1,648,651 + LU632_RS08770 0.12 -4.1 1,648,656 - LU632_RS08770 0.13 -2.2 1,648,656 - LU632_RS08770 0.13 +0.9 1,648,717 - LU632_RS08770 0.18 -0.6 1,648,749 + LU632_RS08770 0.21 -4.4 1,648,750 - LU632_RS08770 0.21 -2.6 1,648,862 - LU632_RS08770 0.31 -3.3 1,648,885 + LU632_RS08770 0.33 -4.3 1,648,886 - LU632_RS08770 0.33 -0.1 1,648,899 - LU632_RS08770 0.34 -2.6 1,648,975 + LU632_RS08770 0.41 -5.4 1,648,976 - LU632_RS08770 0.41 -0.1 1,648,992 + LU632_RS08770 0.42 -0.6 1,648,998 + LU632_RS08770 0.43 -5.0 1,648,999 - LU632_RS08770 0.43 -3.7 1,648,999 - LU632_RS08770 0.43 -2.1 1,649,014 + LU632_RS08770 0.44 -0.1 1,649,014 + LU632_RS08770 0.44 +0.9 1,649,050 + LU632_RS08770 0.48 -2.4 1,649,050 + LU632_RS08770 0.48 -0.1 1,649,234 + LU632_RS08770 0.64 -4.8 1,649,453 - LU632_RS08770 0.83 -1.4 1,649,456 + LU632_RS08770 0.83 -0.1 1,649,603 + -3.1 1,649,603 + -2.2 1,649,665 + -1.9 1,649,695 + -3.1 1,649,695 + -2.6 1,649,769 + LU632_RS08775 0.25 -3.8 1,649,770 - LU632_RS08775 0.25 -3.1 1,649,771 + LU632_RS08775 0.26 -1.6 1,649,771 + LU632_RS08775 0.26 -3.1 1,649,772 - LU632_RS08775 0.26 -1.1 1,649,851 - LU632_RS08775 0.44 -2.5 1,649,967 + LU632_RS08775 0.71 -3.1 1,649,968 + LU632_RS08775 0.71 -3.1 1,649,983 + LU632_RS08775 0.74 +0.9 1,650,042 - LU632_RS08775 0.88 -3.1 1,650,048 + LU632_RS08775 0.89 -4.3 1,650,049 - LU632_RS08775 0.89 +0.9 1,650,085 - -2.2 1,650,112 + -1.1 1,650,113 - -3.2 1,650,113 - -4.8 1,650,121 + -0.1 1,650,225 + -0.1 1,650,226 - -5.4 1,650,226 - +0.9 1,650,229 + -2.6 1,650,229 + -2.9 1,650,230 - -1.4 1,650,230 - -2.8 1,650,248 + -2.1 1,650,249 - +0.9 1,650,249 - -1.4 1,650,249 - -3.2 1,650,516 + wzc LU632_RS08780 0.19 -3.7 1,650,517 - wzc LU632_RS08780 0.19 -4.9 1,650,517 - wzc LU632_RS08780 0.19 -1.9 1,650,622 + wzc LU632_RS08780 0.24 -0.6
Or see this region's nucleotide sequence