Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08550

Experiment: Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 5 Petiole 2 (TE2-S-M5-P2)
1,604,188	+	sanA	LU632_RS08545	0.13	-0.9
1,604,345	+	sanA	LU632_RS08545	0.31	+1.0
1,604,395	-	sanA	LU632_RS08545	0.37	-1.0
1,604,403	+	sanA	LU632_RS08545	0.38	-0.6
1,604,426	+	sanA	LU632_RS08545	0.41	-0.5
1,604,427	-	sanA	LU632_RS08545	0.41	-1.0
1,604,500	-	sanA	LU632_RS08545	0.50	-2.0
1,604,536	+	sanA	LU632_RS08545	0.54	-1.0
1,604,536	+	sanA	LU632_RS08545	0.54	-1.2
1,604,536	+	sanA	LU632_RS08545	0.54	-0.9
1,604,536	+	sanA	LU632_RS08545	0.54	-0.0
1,604,536	+	sanA	LU632_RS08545	0.54	-0.4
1,604,537	-	sanA	LU632_RS08545	0.54	+0.3
1,604,537	-	sanA	LU632_RS08545	0.54	-0.3
1,604,638	-	sanA	LU632_RS08545	0.66	-3.1
1,604,639	+	sanA	LU632_RS08545	0.66	-1.7
1,604,675	+	sanA	LU632_RS08545	0.70	+0.4
1,604,676	-	sanA	LU632_RS08545	0.70	-0.0
1,604,694	+	sanA	LU632_RS08545	0.73	-0.5
1,604,697	-	sanA	LU632_RS08545	0.73	+3.8
1,604,697	-	sanA	LU632_RS08545	0.73	-2.0
1,604,730	-	sanA	LU632_RS08545	0.77	-2.5
1,604,730	-	sanA	LU632_RS08545	0.77	-0.8
1,604,732	+	sanA	LU632_RS08545	0.77	-0.3
1,604,740	-	sanA	LU632_RS08545	0.78	-2.0
1,604,740	-	sanA	LU632_RS08545	0.78	+0.0
1,604,740	-	sanA	LU632_RS08545	0.78	+0.5
1,604,742	+	sanA	LU632_RS08545	0.78	-0.7
1,604,743	-	sanA	LU632_RS08545	0.78	+0.5
1,604,759	+	sanA	LU632_RS08545	0.80	-0.6
1,604,896	-				+1.2
1,604,907	-				+1.1
1,604,920	+				-0.1
1,604,921	-				-4.2
1,605,072	+				+2.0
1,605,072	+				+0.4
1,605,073	-				+1.2
1,605,074	+				-2.6
1,605,154	-				-3.8
1,605,158	-				-2.4
1,605,163	+				-1.6
1,605,164	-				-1.8
1,605,308	-				-0.9
1,605,308	-				+1.0
1,605,308	-				+1.8
1,605,457	-		LU632_RS08550	0.18	+0.5
1,605,467	-		LU632_RS08550	0.19	-1.6
1,605,467	-		LU632_RS08550	0.19	-0.5
1,605,562	+		LU632_RS08550	0.24	-1.2
1,606,048	+		LU632_RS08550	0.53	-0.4
1,606,058	+		LU632_RS08550	0.53	-1.8
1,606,058	+		LU632_RS08550	0.53	+1.0
1,606,128	-		LU632_RS08550	0.57	-0.7
1,606,196	-		LU632_RS08550	0.61	-1.3
1,606,221	+		LU632_RS08550	0.63	-1.5
1,606,221	+		LU632_RS08550	0.63	-0.0
1,606,221	+		LU632_RS08550	0.63	+0.2
1,606,274	-		LU632_RS08550	0.66	-2.8
1,606,284	+		LU632_RS08550	0.67	-2.6
1,606,314	+		LU632_RS08550	0.68	+1.8
1,606,537	+		LU632_RS08550	0.82	-0.0
1,606,539	+		LU632_RS08550	0.82	-0.6
1,606,539	+		LU632_RS08550	0.82	-1.0
1,606,540	-		LU632_RS08550	0.82	+0.6
1,606,540	-		LU632_RS08550	0.82	-0.6
1,606,543	+		LU632_RS08550	0.82	-0.8
1,606,603	+		LU632_RS08550	0.85	-2.5
1,606,815	+				+0.2
1,606,815	+				-1.0
1,606,815	+				-1.6
1,606,815	+				+0.4
1,606,816	-				+1.0
1,606,816	-				-0.7
1,606,893	-				+2.2
1,606,897	+				-0.6
1,606,931	+				+2.9
1,606,970	+				-1.0
1,607,109	+	cdd	LU632_RS08555	0.16	-1.8
1,607,109	+	cdd	LU632_RS08555	0.16	+2.5
1,607,135	-	cdd	LU632_RS08555	0.19	+2.3
1,607,175	-	cdd	LU632_RS08555	0.23	-0.6
1,607,375	+	cdd	LU632_RS08555	0.46	+2.0
1,607,476	-	cdd	LU632_RS08555	0.57	+1.0
1,607,478	-	cdd	LU632_RS08555	0.58	+2.6
1,607,586	+	cdd	LU632_RS08555	0.70	+0.8
1,607,587	-	cdd	LU632_RS08555	0.70	+1.0
1,607,590	-	cdd	LU632_RS08555	0.70	-0.5
1,607,603	-	cdd	LU632_RS08555	0.72	+0.0
1,607,603	-	cdd	LU632_RS08555	0.72	-0.2
1,607,603	-	cdd	LU632_RS08555	0.72	+0.5
1,607,754	+	cdd	LU632_RS08555	0.89	+0.4
1,607,754	+	cdd	LU632_RS08555	0.89	-2.8
1,607,755	-	cdd	LU632_RS08555	0.89	-0.2
1,607,760	-	cdd	LU632_RS08555	0.89	-0.7
1,607,760	-	cdd	LU632_RS08555	0.89	+0.2
1,607,760	-	cdd	LU632_RS08555	0.89	-1.8